Results 81 to 90 of about 6,253 (207)
Efficient implementation of lazy suffix trees [PDF]
, 2003 Giegerich R, Kurtz S, Stoye J. Efficient implementation of lazy suffix trees. SOFTWARE-PRACTICE & EXPERIENCE. 2003;33(11):1035-1049.We present an efficient implementation of a write-only top-down construction for suffix trees.
Stoye, Jens ; https://orcid.org/ +2 more
core +2 more sources
Plant, Cell &Environment, EarlyView.ABSTRACT Brassica napus (canola) is a significant contributor to the world's oil production and is cultivated across continents, yet acidic soils with aluminium (Al3+) and manganese (Mn2+) toxicities limit its production. The genetic determinants underlying natural variation for acidic soil tolerance in canola are unknown and need to be determined ...
Harsh Raman +13 more
wiley +1 more source
An(other) Entropy-Bounded Compressed Suffix Tree [PDF]
, 2008 Suffix trees are one of the most important data structures in stringology, with myriads of applications in fluorishing areas like bioinformatics. As their main problem is space usage, recent efforts have focused on compressed suffix tree representations,
Mäkinen, Veli +2 more
core
Parallel Suffix Tree Construction for Genome Sequence Using Hadoop [PDF]
, 2013 Indexing the genome is the basis for many of the bioinformatics applications. Read mapping (sequence alignment) is one such application to align millions of short reads against reference genome.
Satish, Umesh Chandra
core +2 more sources
Construction of distributed suffix trees
Технічна інженеріяThe paper addresses the problem of parallel suffix tree construction over large text arrays without the use of cluster infrastructure. The evolution of relevant algorithms is analysed – from the single-threaded methods of Weiner, McCreight, and Ukkonen ...
D.V. Zvazhii, O.M. Malii
doaj +1 more source
An efficient algorithm for systematic analysis of nucleotide strings suitable for siRNA design
BMC Research Notes, 2011 Background The "off-target" silencing effect hinders the development of siRNA-based therapeutic and research applications. Existing solutions for finding possible locations of siRNA seats within a large database of genes are either too slow, miss a ...
Bode Jonathan +3 more
doaj +1 more source
‘Chrystalline Talk’: Thomas Browne's Poetics of Concretion and Mineral Plain Style
Renaissance Studies, EarlyView.ABSTRACT This article charts the figuration, both material and rhetorical, of mineral bodies in early modern natural philosophy, paying particular attention to the second book of Thomas Browne's Pseudodoxia Epidemica (1646). It argues that concretions (stony calculi and crystals formed through the aggregation of physical matter) make manifest a mineral
Jess Dunmore
wiley +1 more source
The Suffix Tree Data Structure: Theory and Practice [PDF]
openLa tesi affronta lo studio delle strutture dati per l’indicizzazione di stringhe, concentrandosi sui Suffix Tree e, in particolarmente sulla sua variante compressa: Compressed Suffix Tree.
YE, XIAOJUN
core
Engineering a compressed suffix tree implementation [PDF]
, 2009 Välimäki N, Mäkinen V, Gerlach W, Dixit K. Engineering a compressed suffix tree implementation. Journal of Experimental Algorithmics (JEA).
Välimäki, Niko +3 more
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Tijdschrift voor Economische en Sociale Geografie, EarlyView.Abstract This paper explores the commemorative practices of two feminist collectives engaging in anti‐feminicide collages in the cities of Paris and Montreuil. Based on ethnographic fieldwork conducted between 2023 and 2025, it examines how these activist interventions, as temporary urban memorials, intersect memory‐work and care‐work in urban space ...
Morgane Rudaz
wiley +1 more source