Results 101 to 110 of about 679,088 (213)

SDSL-Mobile: Enabling space-efficient data structures for mobile applications

SoftwareX
This paper presents the process and results of porting the Succinct Data Structure Library 2.0 (SDSL-lite), a robust and well-established open-source C++11 library, to Android platforms.
Alexander Barquero, Anisha Wadhwani, Tyler Pencinger, Aaron Hong, Jaime Ruiz, Mattia Prosperi, Christina Boucher   +6 more
doaj   +1 more source

Structator: fast index-based search for RNA sequence-structure patterns

BMC Bioinformatics, 2011
Background The secondary structure of RNA molecules is intimately related to their function and often more conserved than the sequence. Hence, the important task of searching databases for RNAs requires to match sequence-structure patterns. Unfortunately,
Will Sebastian, Backofen Rolf, Kurtz Stefan, Meyer Fernando, Beckstette Michael   +4 more
doaj   +1 more source

Prevalence and Genomic Characterization of mcr‐Positive Enterobacteriaceae in Retail Meat in Thailand Following the Colistin Ban

Microbiology and Immunology, Volume 70, Issue 9, Page 402-415, September 2026.
ABSTRACT This study aimed to investigate the prevalence and characteristics of mcr‐positive Enterobacteriaceae in retail meat in Thailand following the national ban on prophylactic colistin use in food producing animals. A total of 152 meat samples (103 chicken and 49 pork) were collected from supermarkets and open markets between July and September ...
Ahmed Abououf, Sharda Prasad Awasthi, Asmaa M. Elbastawesy, Noritoshi Hatanaka, Atsushi Hinenoya, Srinuan Somroop, Yukihiro Kaneko, Shinji Yamasaki   +7 more
wiley   +1 more source

Constructing chromosome scale suffix trees

, 2004
© 2004, Australian Computer Society Inc.Suffix trees have been the focus of significant research interest as they permit very efficient solutions to a range of string and sequence searching problems.
Brown, A.
core  

Fast Fully-Compressed Suffix Trees

, 2014
We speed up the fully-compressed suffix tree representation (FCST), which is the only one using asymptotically optimal space. Classical representations of suffix trees are fast, but require too much space (O(n log n) bits for a string of length n over an
Gonzalo Navarro, Luís M. S. Russo
core   +1 more source

Experimental Evidence of High‐Dimensional Elementome Shifts Due to Coexistence and Its Effects on Growth Rates

Ecology Letters, Volume 29, Issue 9, September 2026.
Coexistence, not just environment, reshapes an organism's elementome. Growing mosses alone versus in mixtures revealed high‐dimensional shifts in bioelement concentrations that scaled with community elemental diversity, giving the first experimental support for the biogeochemical niche hypothesis.
M. Fernández‐Martínez, A. Martín, E. Rodríguez‐Penedo, S. Poblador, E. Romero, F. Sabater, R. Grau‐Andrés   +6 more
wiley   +1 more source

Grammar Compression With Support to Fast Substring Extraction

IEEE Access
We present a simple grammar-based compression strategy derived from the factorization used in the DC3 suffix-sorting algorithm that supports fast substring extraction. The input string is partitioned into non-overlapping substrings of fixed length $X$ ,
Danyelle S. O. Angelo, Daniel S. N. Nunes, Guilherme P. Telles, Felipe A. Louza   +3 more
doaj   +1 more source

PERIODIZING GEOLOGICALLY OUTWITH (AND WITHOUT?) THE ANTHROPOCENE: PASTS, AGENCIES, AND THE TERRESTRIAL

History and Theory, Volume 65, Issue 3, Page 344-367, September 2026.
ABSTRACT As a periodization that is generally understood to refer to an era of Terrestrial relationships that developed with modernization and nuclearization, the Anthropocene cannot be applied simply to premodern histories and texts. However, it has introduced historians to geological periodization as a mode of describing periods of changed ...
Gwenffrewi J. Morgan
wiley   +1 more source

Pattern Matching on Sparse Suffix Trees [PDF]

, 2011
International audienceWe consider a compact text index based on evenly spaced sparse suffix trees of a text [9]. Such a tree is defined by partitioning the text into blocks of equal size and constructing the suffix tree only for those suffixes that start
Gregory Kucherov, Kolpakov, Roman, Tatiana Starikovskaya, Starikovskaya, Tatiana, Kucherov, Gregory, Roman Kolpakov   +5 more
core   +1 more source

ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy.

PLoS Computational Biology, 2018
The 3D structure of chromatin plays a key role in genome function, including gene expression, DNA replication, chromosome segregation, and DNA repair.
Carl Barton, Sandro Morganella, Øyvind Ødegård-Fougner, Stephanie Alexander, Jonas Ries, Tomas Fitzgerald, Jan Ellenberg, Ewan Birney   +7 more
doaj   +1 more source