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The Dfam community resource of transposable element families, sequence models, and genome annotations

open access: yesMobile DNA, 2021
Dfam is an open access database of repetitive DNA families, sequence models, and genome annotations. The 3.0–3.3 releases of Dfam ( https://dfam.org ) represent an evolution from a proof-of-principle collection of transposable element families in model ...
Jessica Storer   +4 more
doaj   +2 more sources

Transposable element-derived sequences in vertebrate development

open access: yesMobile DNA, 2021
Transposable elements (TEs) are major components of all vertebrate genomes that can cause deleterious insertions and genomic instability. However, depending on the specific genomic context of their insertion site, TE sequences can sometimes get ...
Ema Etchegaray   +3 more
doaj   +2 more sources

Inference of transposable element ancestry. [PDF]

open access: yesPLoS Genetics, 2014
Most common methods for inferring transposable element (TE) evolutionary relationships are based on dividing TEs into subfamilies using shared diagnostic nucleotides.
Aaron C Wacholder   +7 more
doaj   +5 more sources

Identification of transposable element families from pangenome polymorphisms [PDF]

open access: yesMobile DNA
Background Transposable Elements (TEs) are segments of DNA, typically a few hundred base pairs up to several tens of thousands bases long, that have the ability to generate new copies of themselves in the genome.
Pío Sierra, Richard Durbin
doaj   +3 more sources

RepetDB: a unified resource for transposable element references

open access: yesMobile DNA, 2019
Background Thanks to their ability to move around and replicate within genomes, transposable elements (TEs) are perhaps the most important contributors to genome plasticity and evolution.
Joëlle Amselem   +11 more
doaj   +2 more sources

Mapping of important taxonomic and productivity traits using genic and non-genic transposable element markers in peanut (Arachis hypogaea L.). [PDF]

open access: yesPLoS ONE, 2017
A mapping population of recombinant inbred lines (RILs) derived from TMV 2 and its mutant, TMV 2-NLM was employed for mapping important taxonomic and productivity traits using genic and non-genic transposable element markers in peanut.
Anil A Hake   +10 more
doaj   +2 more sources

Transposable elements

open access: yesCurrent Biology, 2022
Transposable elements are known by many names, including 'transposons', 'interspersed repeats', 'selfish genetic elements', 'jumping genes', and 'parasitic DNA', but here we will refer to them simply as transposable elements. Many biologists will have heard of transposable elements and their ability to transpose (change position) within the genome. But
Hayward, Alexandre, Gilbert, Clement
openaire   +5 more sources

Transposable elements in Drosophila [PDF]

open access: yesMobile DNA, 2020
AbstractDrosophila has been studied as a biological model for many years and many discoveries in biology rely on this species. Research on transposable elements (TEs) is not an exception. Drosophila has contributed significantly to our knowledge on the mechanisms of transposition and their regulation, but above all, it was one of the first organisms on
Mérel, Vincent   +3 more
openaire   +5 more sources

Transposable element landscapes in aging Drosophila.

open access: yesPLoS Genetics, 2022
Genetic mechanisms that repress transposable elements (TEs) in young animals decline during aging, as reflected by increased TE expression in aged animals. Does increased TE expression during aging lead to more genomic TE copies in older animals?
Nachen Yang   +9 more
doaj   +3 more sources

Transposable element-mediated rearrangements are prevalent in human genomes

open access: yesbioRxiv, 2022
Here the authors show that transposable element-mediated rearrangements impact more than 500 kbp of an average human genome, are a source of individual variation, a substrate for evolutionary change, and can occur through diverse mechanisms. Transposable
Parithi Balachandran   +5 more
semanticscholar   +1 more source

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