Results 1 to 10 of about 2,296,009 (367)

The Dfam community resource of transposable element families, sequence models, and genome annotations

Mobile DNA, 2021
Dfam is an open access database of repetitive DNA families, sequence models, and genome annotations. The 3.0–3.3 releases of Dfam ( https://dfam.org ) represent an evolution from a proof-of-principle collection of transposable element families in model ...
Jessica Storer, Robert Hubley, Jeb Rosen, Travis J. Wheeler, Arian F. Smit   +4 more
doaj   +2 more sources

Transposable element-derived sequences in vertebrate development

Mobile DNA, 2021
Transposable elements (TEs) are major components of all vertebrate genomes that can cause deleterious insertions and genomic instability. However, depending on the specific genomic context of their insertion site, TE sequences can sometimes get ...
Ema Etchegaray, Magali Naville, Jean-Nicolas Volff, Zofia Haftek-Terreau   +3 more
doaj   +2 more sources

Identification of transposable element families from pangenome polymorphisms [PDF]

Mobile DNA
Background Transposable Elements (TEs) are segments of DNA, typically a few hundred base pairs up to several tens of thousands bases long, that have the ability to generate new copies of themselves in the genome.
Pío Sierra, Richard Durbin
doaj   +3 more sources

RepetDB: a unified resource for transposable element references

Mobile DNA, 2019
Background Thanks to their ability to move around and replicate within genomes, transposable elements (TEs) are perhaps the most important contributors to genome plasticity and evolution.
Joëlle Amselem, Guillaume Cornut, Nathalie Choisne, Michael Alaux, Françoise Alfama-Depauw, Véronique Jamilloux, Florian Maumus, Thomas Letellier, Isabelle Luyten, Cyril Pommier, Anne-Françoise Adam-Blondon, Hadi Quesneville   +11 more
doaj   +2 more sources

Mapping of important taxonomic and productivity traits using genic and non-genic transposable element markers in peanut (Arachis hypogaea L.). [PDF]

PLoS ONE, 2017
A mapping population of recombinant inbred lines (RILs) derived from TMV 2 and its mutant, TMV 2-NLM was employed for mapping important taxonomic and productivity traits using genic and non-genic transposable element markers in peanut.
Anil A Hake, Kenta Shirasawa, Arati Yadawad, M Sukruth, Malagouda Patil, Spurthi N Nayak, S Lingaraju, P V Patil, H L Nadaf, M V C Gowda, R S Bhat   +10 more
doaj   +2 more sources

Transposable element landscapes in aging Drosophila.

PLoS Genetics, 2022
Genetic mechanisms that repress transposable elements (TEs) in young animals decline during aging, as reflected by increased TE expression in aged animals. Does increased TE expression during aging lead to more genomic TE copies in older animals?
Nachen Yang, Satyam P Srivastav, Reazur Rahman, Qicheng Ma, Gargi Dayama, Sizheng Li, Madoka Chinen, Elissa P Lei, Michael Rosbash, Nelson C Lau   +9 more
doaj   +3 more sources

Transposable element-mediated rearrangements are prevalent in human genomes

bioRxiv, 2022
Here the authors show that transposable element-mediated rearrangements impact more than 500 kbp of an average human genome, are a source of individual variation, a substrate for evolutionary change, and can occur through diverse mechanisms. Transposable
Parithi Balachandran, Isha A. Walawalkar, Jacob I. Flores, Jacob N. Dayton, P. Audano, C. Beck   +5 more
semanticscholar   +1 more source

Comprehensive identification of transposable element insertions using multiple sequencing technologies

Nature Communications, 2021
Transposable elements (TEs) help shape the structure and function of the human genome. When inserted into some locations, TEs may disrupt gene regulation and cause diseases.
Chong Chu, Rebeca Borges-Monroy, Vinayak V. Viswanadham, Soohyun Lee, Heng Li, E. Lee, P. Park   +6 more
semanticscholar   +1 more source

Whole genome resequencing reveals natural target site preferences of transposable elements in Drosophila melanogaster. [PDF]

PLoS ONE, 2012
Transposable elements are mobile DNA sequences that integrate into host genomes using diverse mechanisms with varying degrees of target site specificity.
Raquel S Linheiro, Casey M Bergman
doaj   +1 more source

Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE

Nature Communications, 2021
Transposable elements (TEs) make up a majority of a typical eukaryote’s genome, and contribute to cell heterogeneity in unclear ways. Single-cell sequencing technologies are powerful tools to explore cells, however analysis is typically gene-centric and ...
Jiangping He, I. A. Babarinde, Li Sun, Shuyang Xu, Ruhai Chen, Junjie Shi, Yuanjie Wei, Yuhao Li, Gang Ma, Zhuang Qiang, A. Hutchins, Jiekai Chen   +11 more
semanticscholar   +1 more source