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Metagenomic sequencing of mpox virus clade Ib lesions identifies possible bacterial and viral co-infections in hospitalized patients in eastern DRC

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Leonard Schuele   +16 more
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Viral metagenomics

Nature Reviews Microbiology, 2005
Viruses, most of which infect microorganisms, are the most abundant biological entities on the planet. Identifying and measuring the community dynamics of viruses in the environment is complicated because less than one percent of microbial hosts have been cultivated. Also, there is no single gene that is common to all viral genomes, so total uncultured
Robert A, Edwards, Forest, Rohwer
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Viral Metagenomics

2018
This volume explores the use of viral metagenomics to diagnose known viruses for plant and food production, human and animal health, and identifying viral vectors like insects. The chapters in this book cover topics, such as sRNAs isolation from tissues of grapevines and woody plants, high-resolution screening of arthropod and plant viral communities ...
Pantaleo V, Chiumenti M
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Metagenomic signatures of 86 microbial and viral metagenomes

Environmental Microbiology, 2009
Summary Previous studies have shown that dinucleotide abundances capture the majority of variation in genome signatures and are useful for quantifying lateral gene transfer and building molecular phylogenies. Metagenomes contain a mixture of individual genomes, and might be expected to lack compositional signatures.
Willner, Dana   +2 more
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Viral Metagenome

2014
We want to find some pathogenic viruses from the Bos grunniens fecal sample.
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Laboratory procedures to generate viral metagenomes

Nature Protocols, 2009
This collection of laboratory protocols describes the steps to collect viruses from various samples with the specific aim of generating viral metagenome sequence libraries (viromes). Viral metagenomics, the study of uncultured viral nucleic acid sequences from different biomes, relies on several concentration, purification, extraction, sequencing and ...
Thurber, Rebecca   +4 more
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Metagenomic identification of viral pathogens

Trends in Biotechnology, 2013
The target-independent identification of viral pathogens using 'shotgun' metagenomic sequencing is an emerging approach with potentially wide applications in clinical diagnostics, public health monitoring, and viral discovery. In this approach, all viral nucleic acids present in a sample are sequenced in a random, shotgun manner.
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Exploring the viral world through metagenomics

Current Opinion in Virology, 2011
Viral metagenomics, or shotgun sequencing of purified viral particles, has revolutionized the field of environmental virology by allowing the exploration of viral communities in a variety of sample types throughout the biosphere. The introduction of viral metagenomics has demonstrated that dominant viruses in environmental communities are not well ...
Rosario, Karyna, Breitbart, Mya
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Freshwater Viral Metagenome Analyses Targeting dsDNA Viruses

2023
Viral metagenomics is one of the most widely used approaches to study viral population genomics. With the recent development of bioinformatic tools, the number of molecular biological methods, programs, and software to analyze viral metagenome data have greatly increased. Here, we describe the basic analysis workflow along with bioinformatic tools that
Kira, Moon, Jang-Cheon, Cho
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