Results 1 to 10 of about 342,525 (169)

Adaptive compression framework for giga-pixel whole slide images [PDF]

Nature Communications
Digital pathology generates gigapixel whole-slide images that require extensive storage, limiting scalability and increasing costs. Traditional compression methods apply uniform ratios, disregarding variations in diagnostic importance across regions ...
Jonghyun Lee, Lina Takemaru, D. M. Bappy, Ye Sul Jeong, Won-Ki Jeong, Derek Oldridge, Dokyoon Kim, Sangjeong Ahn, Sung Hak Lee   +8 more
doaj   +2 more sources

Multimodal analysis of whole slide images in colorectal cancer [PDF]

npj Digital Medicine
Multimodal models have enabled the integration of digital pathology, radiology, clinical information, and omics data to enhance Colorectal cancer (CRC) care.
Jitendra Jonnagaddala, Miljana Shulajkovska, Anton Gradišek, Toni Rose Jue, Qifeng Zhou, Yuzhi Guo, Jamil Mahmoud El Chayeb, Ruijiang Li, Jana Lipkova, Jakob Nikolas Kather, Junzhou Huang   +10 more
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Generating dermatopathology reports from gigapixel whole slide images with HistoGPT [PDF]

Nature Communications
Histopathology is the reference standard for diagnosing the presence and nature of many diseases, including cancer. However, analyzing tissue samples under a microscope and summarizing the findings in a comprehensive pathology report is time-consuming ...
Manuel Tran, Paul Schmidle, Ruifeng Ray Guo, Sophia J. Wagner, Valentin Koch, Valerio Lupperger, Brenna Novotny, Dennis H. Murphree, Heather D. Hardway, Marina D’Amato, Judith Lefkes, Daan J. Geijs, Annette Feuchtinger, Alexander Böhner, Robert Kaczmarczyk, Tilo Biedermann, Avital L. Amir, Antien L. Mooyaart, Francesco Ciompi, Geert Litjens, Chen Wang, Nneka I. Comfere, Kilian Eyerich, Stephan A. Braun, Carsten Marr, Tingying Peng   +25 more
doaj   +2 more sources

Whole slide image data utilization informed by digital diagnosis patterns

Journal of Pathology Informatics, 2022
Context: Despite the benefits of digital pathology, data storage and management of digital whole slide images introduces new logistical and infrastructure challenges to traditionally analog pathology labs.
Kimberly Ashman, Huimin Zhuge, Erin Shanley, Sharon Fox, Shams Halat, Andrew Sholl, Brian Summa, J. Quincy Brown   +7 more
doaj   +1 more source

SlideJ: An ImageJ plugin for automated processing of whole slide images. [PDF]

PLoS ONE, 2017
The digital slide, or Whole Slide Image, is a digital image, acquired with specific scanners, that represents a complete tissue sample or cytological specimen at microscopic level. While Whole Slide image analysis is recognized among the most interesting
Vincenzo Della Mea, Giulia L Baroni, David Pilutti, Carla Di Loreto   +3 more
doaj   +1 more source

Scale-Aware Transformers for Diagnosing Melanocytic Lesions

IEEE Access, 2021
Diagnosing melanocytic lesions is one of the most challenging areas of pathology with extensive intra- and inter-observer variability. The gold standard for a diagnosis of invasive melanoma is the examination of histopathological whole slide skin biopsy ...
Wenjun Wu, Sachin Mehta, Shima Nofallah, Stevan Knezevich, Caitlin J. May, Oliver H. Chang, Joann G. Elmore, Linda G. Shapiro   +7 more
doaj   +1 more source

Synthesizing whole slide images [PDF]

2015 9th International Symposium on Image and Signal Processing and Analysis (ISPA), 2015
The increasing availability of digital whole slide images opens new perspectives for computer-assisted image analysis complementing modern histopathology, assuming we can implement reliable and efficient image analysis algorithms to extract the biologically relevant information.
Apou, Gregory, Feuerhake, Friedrich, Forestier, Germain, Naegel, Benoit, Wemmert, Cedric   +4 more
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Direct Gene Expression Profile Prediction for Uveal Melanoma from Digital Cytopathology Images via Deep Learning and Salient Image Region Identification

Ophthalmology Science, 2023
Objective: To demonstrate that deep learning (DL) methods can produce robust prediction of gene expression profile (GEP) in uveal melanoma (UM) based on digital cytopathology images. Design: Evaluation of a diagnostic test or technology.
T. Y. Alvin Liu, MD, Haomin Chen, MA, Catalina Gomez, MS, Zelia M. Correa, MD, PhD, Mathias Unberath, PhD   +4 more
doaj   +1 more source

Pathology Trainees’ Experience and Attitudes on Use of Digital Whole Slide Images

Academic Pathology, 2020
Digital whole slide images are Food and Drug Administration approved for clinical diagnostic use in pathology; however, integration is nascent. Trainees from 9 pathology training programs completed an online survey to ascertain attitudes toward and ...
Joann G. Elmore MD, MPH, Hannah Shucard MS, Annie C. Lee PhD, Pin-Chieh Wang PhD, Kathleen F. Kerr PhD, Patricia A. Carney PhD, Trafton Drew PhD, Tad T. Brunyé PhD, Donald L. Weaver MD   +8 more
doaj   +1 more source

Managing and querying whole slide images [PDF]

SPIE Proceedings, 2012
High-resolution pathology images provide rich information about the morphological and functional characteristics of biological systems, and are transforming the field of pathology into a new era. To facilitate the use of digital pathology imaging for biomedical research and clinical diagnosis, it is essential to manage and query both whole slide images
Fusheng, Wang, Tae W, Oh, Cristobal, Vergara-Niedermayr, Tahsin, Kurc, Joel, Saltz   +4 more
openaire   +2 more sources