Snakemake—a scalable bioinformatics workflow engine [PDF]
Bioinformatics, 2012 Abstract Summary: Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow. It is the first system to support the use of automatically inferred multiple named wildcards
Köster, Johannes, Rahmann, Sven
semanticscholar +7 more sources
DEWEY: the DICOM-enabled workflow engine system. [PDF]
J Digit Imaging, 2014 Workflow is a widely used term to describe the sequence of steps to accomplish a task. The use of workflow technology in medicine and medical imaging in particular is limited. In this article, we describe the application of a workflow engine to improve workflow in a radiology department.
Erickson BJ +4 more
europepmc +5 more sources
Scipion3: A workflow engine for cryo-electron microscopy image processing and structural biology. [PDF]
Biol Imaging, 2023 Image-processing pipelines require the design of complex workflows combining many different steps that bring the raw acquired data to a final result with biological meaning.
Conesa P +26 more
europepmc +2 more sources
Construction of a specialized integrated simulation platform for molecule screening based on scientific computing workflow engine [PDF]
Scientific Reports, 2023 Numerical simulation is an efficient tool for evaluation and prediction of material properties and behavior in many industrial domains such as the development of novel materials and medicines.
Chengqiu Gou +6 more
doaj +2 more sources
Fastr: A Workflow Engine for Advanced Data Flows in Medical Image Analysis [PDF]
Frontiers in ICT, 2016 With the increasing number of datasets encountered in imaging studies, the increasing complexity of processing workflows, and a growing awareness for data stewardship, there is a need for managed, automated workflows. In this paper we introduce Fastr, an
Hakim C. Achterberg +2 more
openalex +2 more sources
Lightweight SOA-Based Multi-Engine Architecture for Workflow Systems in Mobile Ad Hoc Networks
IEEE Access, 2018 At present, most mainstream workflow systems adopt client/server architecture where the workflow system server (WSS) runs on a server in a fixed network or cloud and the workflow system client (WSC) runs on a PC or a mobile smart device (MSD), such as a ...
Tongguang Zhang +7 more
doaj +2 more sources
Modeling, Design, and Implementation of a Cloud Workflow Engine Based on Aneka
Journal of Applied Mathematics, 2014 This paper presents a Petri net-based model for cloud workflow which plays a key role in industry. Three kinds of parallelisms in cloud workflow are characterized and modeled. Based on the analysis of the modeling, a cloud workflow engine is designed and
Jiantao Zhou +5 more
doaj +2 more sources
Automated model optimisation using the Cylc workflow engine (Cyclops v1.0) [PDF]
Geoscientific Model Development, 2018 Most geophysical models include many parameters that are not fully determined by theory, and can be tuned to improve the model's agreement with available data.
R. M. Gorman, H. J. Oliver
doaj +2 more sources
BMC Medical Research Methodology, 2011 Background Workflow engine technology represents a new class of software with the ability to graphically model step-based knowledge. We present application of this novel technology to the domain of clinical decision support.
Oberg Ryan +3 more
doaj +2 more sources
Modular Workflow Engine for Distributed Services using Lightweight Java Clients [PDF]
, 2009 In this article we introduce the concept and the first implementation of a lightweight client-server-framework as middleware for distributed computing.
Lennartz, W. +2 more
core +2 more sources