Skip to main content

Crystallization of Ribosomes, Ribosomal Subunits, and Individual Ribosomal Proteins

  • Chapter
Growth of Crystals

Part of the book series: Growth of Crystals ((GROC,volume 16))

  • 243 Accesses

Abstract

There is interest in the three-dimensional structure of the ribosome since it is a unique multicomponent biological system responsible for the biosynthesis of protein in the cell. The exceedingly complex structure of ribosomes (for example, the Escherichia coli ribosome, the molecular weight of which is 2.15•106 Da, consists of three types of RNA and 52 individual ribosomal proteins) makes it difficult to study them using classical methods of x-ray structural analysis.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

Similar content being viewed by others

References

  1. A. S., Spirin, Molecular Biology. Structure of Ribosomes and Biosynthesis of Protein [in Russian], Vysshaya Shkola, Moscow (1986), pp. 62–133.

    Google Scholar 

  2. G., Chamberlis, G. R., Craven, J., Davies, K., Davies, L. Kahan, and M. Nomura (eds.), Ribosomes: Structure, Function and Genetics, Univ. Park Press, Baltimore (1980).

    Google Scholar 

  3. V. D., Vasil’ev, “Electron microscopy of ribosomes of Escherichia coli,” Author’s Abstract of Doctoral Dissertation, Biological Sciences, Moscow (1984).

    Google Scholar 

  4. A. Liljas, “Structural studies of ribosomes,” Prog. Biophys. Mol Biol., 40, 101–228 (1982).

    Article  Google Scholar 

  5. H. G., Wittmann, “Architecture of procaryotic ribosomes,” Annu. Rev. Biochem., 52, 35–05 (1983).

    Article  CAS  Google Scholar 

  6. J. T., Finch, L. C., Lutter, D. Rhodes, et al., “Structure of nucleosome core particles of chromatin,” Nature (London), 269,29–36 (1977).

    Article  CAS  Google Scholar 

  7. J. T., Finch, R. S., Brown, D. Rhodes, et al., “X-ray diffraction study of a new crystal form of the nucleosome core showing higher resolution,” J. Mol Biol., 145, 757–769 (1981).

    Article  CAS  Google Scholar 

  8. F. A., Jurnak and A. McPherson (eds.), Biological Macromolecules and Assemblies, Vol. 1, Virus Structure, Wiley, New York (1984).

    Google Scholar 

  9. Y. Kress, M. Wittner, and R. M., Rosenbaum, “Sites of cytoplasmic ribonucleoprotein-filament assembly in relation to helical body formation in axenic trophozoites of Entamoeba histolytica,” J. Cell Biol., 49, 773–784 (1971).

    Article  Google Scholar 

  10. J. A., Lake and H. S., Slayter, “Three-dimensional structure of the chromatoid body helix of Entamoeba invadens,” J. Mol Biol., 66, 271–282 (1972).

    Article  CAS  Google Scholar 

  11. R. A., Milligan and P. N. T., Unvin, “In vitro crystallization of ribosomes from chick embryos,” J. Cell Biol., 95, 648–53 (1982).

    Article  CAS  Google Scholar 

  12. P. N. T., Unvin, “Three-dimensional model of membrane-bound ribosome obtained by electron microscopy,” Nature (London), 269, 118–122 (1977).

    Article  Google Scholar 

  13. W. Kuhlbrandt and P. N. T., Unvin, “Distribution of RNA and protein in crystalline eucaryotic ribosomes,” J. Mol Biol., 156, 431–448 (1982).

    Article  CAS  Google Scholar 

  14. M. W., Oark, K. Leonard, and J. A., Lake, “Ribosomal crystalline arrays of large subunits from Escherichia coli,” Science, 216, 999–1001 (1982).

    Article  Google Scholar 

  15. L. O’Brien, K. Shelley, J. Towfighi, and A. McPherson, “Crystalline ribosomes are present in brains from senile humans,” Proc. Natl. Acad. Sci USA, 71, 2260–2264 (1980).

    Article  Google Scholar 

  16. A. Yonath, J. Mussig, B. Tesche, et al., “Crystallization of the large ribosomal subunits from Bacillus stearothermophilus,” Biochem Int., 1, 428–435

    Google Scholar 

  17. A. Yonath, J. Mussig, and H. G. Wittmann, “Parameters for crystal growth of ribosomal subunits,” J. Cell Biochem., 19, 629–039 (1982).

    Article  Google Scholar 

  18. A. Yonath, B. Tesche, S. Lorenz, et al., “Several crystal forms of the Bacillus stearothermophilus 50S ribosomal particles,” FEBS Lett., 154, 15–20 (1983).

    Article  CAS  Google Scholar 

  19. A. Yonath, J. Piefke, J. Mussig, et al., “A compact three-dimensional form of the large ribosomal subunits from Bacillus stearothermophilus,” FEBS Lett., 163, 69–72 (1983).

    Article  CAS  Google Scholar 

  20. A. Yonath, “Three-dimensional crystals of ribosomal particles,” Trends Biochem. Sci., 9, 227–230 (1984).

    Article  Google Scholar 

  21. A. Yonath, H. D., Bartunik, K. S., Bartels, and H. G., Wittmann, “Some x-ray diffraction patterns from single crystals of the large ribosomal subunits from Bacillus stearothermophilus,” J. Mol Biol., 171, 201–206 (1984).

    Article  Google Scholar 

  22. A. Yonath, M. A., Saper, I. Makowsky, et al., “Characterization of single crystals of the large ribosomal particles from Bacillus stearothermophilus,” J. Mol Biol., 187, 633–636 (1986).

    Article  CAS  Google Scholar 

  23. A. McPherson, “Crystallization of proteins from polyethylene glycol,” J. Biol Chem., 251, 6300–6303 (1976).

    CAS  Google Scholar 

  24. A. Shevack, H. S., Gevitz, B. Hennemann, et al., “Characterization and crystallization of ribosomal particles from Halobacterium marismortui,” FEBS Lett., 184, 68–71 (1985).

    Article  CAS  Google Scholar 

  25. M. Shoham, J. Mussig, A. Shevack, et al., “A new crystal form of large ribosomal subunits from Halobacterium marismortui,” FEBS Lett., 208, 321–324 (1986).

    Article  Google Scholar 

  26. I. Makowski, F. Frolow, M. A. Saper, et al., “Single crystals of large ribosomal particles from Halobocterium marismortui diffract to 7 Å,” J. Mol Biol., 193, 819–822 (1987).

    Article  CAS  Google Scholar 

  27. A. Yonath and H. G., Wittmann, “Crystallographic and image reconstitution studies on ribosomal particles from bacterial sources,” in: Structure, Function, and Genetics of Ribosomes, B. Hardesty and G. Kramer (eds.), Springer, Heidelberg-New York (1986), pp. 112–127.

    Google Scholar 

  28. G. A. Bentley, J. T. Finch, and A. Lewit-Bentley, “Neutron diffraction studies on crystals of nucleosome cores using contrast variation,” J. Mol Biol., 145, 771–784 (1981).

    Article  CAS  Google Scholar 

  29. D. R., Davies and D. M., Segal, “Protein crystallization: microtechniques involving vapor diffusion,” Methods Enzymol., 22, 266–269 (1971).

    Article  Google Scholar 

  30. C. Thaller, L. H., Weaver, G. Eichele, et al., “Repeated seeding technique for growing large single crystals of proteins,” J. Mol Biol., 147, 465–469 (1981).

    Article  CAS  Google Scholar 

  31. S. Tsuji, K. Suzuki, and K. Imahori, “Crystallization of DNA-dependent RNA polymerase from Thermus thermophilus HB8,” Nature (London), 261, 725–726 (1976).

    Article  CAS  Google Scholar 

  32. V. V., Barynin and A. I., Grebenko, “T-catalase, a nonheme catalase of extremely thermophilic bacteria,” Dokl. Akad Nauk SSSR, 286, 461–464 (1986).

    CAS  Google Scholar 

  33. L. S., Reshetnikova and M. B., Garber, “Crystallization of elongation factor G from an extreme thermophile, Thermus thermophilus HB8,” FEBS Lett., 154, 149–150 (1983).

    Google Scholar 

  34. L. S., Reshetnikova, M. M., Chemaya, and V. N., Ampilova, “Isolation and crystallization of phenylalanyl-tRNA-synthetase from Thermus thermophilus HB8,” Bioorg. Chem., 13, No.4, 546–549 (1987).

    CAS  Google Scholar 

  35. V. V., Barynin, A. A., Bagin, V. R., Melk-Adamyan, et al., “Three-dimensional structure of T-catalase with 3 Å resolution,” Dokl. Akad. Nauk SSSR, 288, 877–880 (1986).

    CAS  Google Scholar 

  36. Yu. N., Chirgadze, S. V., Nikonov, E. V., Braznikov, et al., “Crystallographic study of elongation factor G from Thermus thermophilus HB8,” J. Mol Biol., 168, 449–450 (1983).

    Article  CAS  Google Scholar 

  37. W. Uttke and C. John, “Protein single crystal growth under microgravity,” J. Cryst. Growth, 76, 663–672 (1986).

    Article  Google Scholar 

  38. H. G., Wittmann, J. Mussig, J. Piefke, et al., “Crystallization of Escherichia coli ribosomes,” FEBS Lett., 146, 217–220 (1982).

    Article  CAS  Google Scholar 

  39. E. A., Karpova, I. N., Serdyuk, Yu. S., Tarkhovskii, et al., “Crystallization of ribosomes from Thermus thermophilus,” Dokl. Akad. Nauk SSSR,289, 1263–1265 (1986).

    CAS  Google Scholar 

  40. K. Appelt, I. Tanaka, S. W., White, and K. S., Wilson, “Proteins of the Bacillus stearothermophilus ribosome. The structure of L6 at 6 Å resolution,” FEBS Lett., 165, 43–45 (1984).

    Google Scholar 

  41. K. Appelt, J. Dijk, S. White, K. Wilson, and K. Bartels, “Proteins of the Bacillus stearothermophilus ribosome. A low resolution crystal analysis of protein L30,” FEBS Lett., 160, 72–14 (1983).

    Article  CAS  Google Scholar 

  42. S. White, K. Appelt, J. Dijk, and K. S., Wilson, “Proteins of the Bacillus stearothermophilus ribosome. A 5 Å structure analysis of protein S5,” FEBS Lett., 163, 73–75 (1983).

    Article  CAS  Google Scholar 

  43. L. Giri, J. Uttlechild, and J. Dijk, “Hydrodynamic studies on the Escherichia coli ribosomal proteins S8 and L6 prepared by two different methods,” FEBS Lett., 79, 238–244 (1977).

    Article  CAS  Google Scholar 

  44. Y. Georgalis and L. Giri, “Shape of protein S5 from the S30 subunit of Escherichia coli ribosome determined in two different environments,” FEBS Lett., 95, 99–102 (1978).

    Article  CAS  Google Scholar 

  45. K. Morikawa, M. Kawakami, and S. Takemura, “Crystallization and preliminary x-ray diffraction study of S5 from Thermus thermophilus HB8,” FEBS Lett., 145, 194–196 (1982).

    Article  CAS  Google Scholar 

  46. A. McPherson, Preparation and Analysis of Protein Crystals, Wiley, New York (1982).

    Google Scholar 

  47. S. É. Sedel’nikova, “Isolation and crystallization of protein TL7 of the large subunit ribosomes of Thermus thermophilus,” Biopolim. Kletka, 3, No.4, 163–166 (1987).

    CAS  Google Scholar 

  48. M. Leijonmarck, S. Eriksson, and A. Uljas, “Crystal structure of a ribosomal component at 2.6 A resolution,” Nature (London), 286, 824–826 (1980).

    Article  CAS  Google Scholar 

  49. A. Liljas, S. Eriksson, D. Donner, and C. G., Kurland, “Isolation and crystallization of stable domains of the protein L7/L12 from Escherichia coli,” FEBS Lett., 88, 300–304 (1978).

    Article  CAS  Google Scholar 

  50. K. Appelt, J. Dijk, and O. Epp, “The crystallization of protein BL17 from 50S ribosomal subunits of Bacillus stearothermophilus,” FEBS Lett., 103, 66–70 (1979).

    Article  CAS  Google Scholar 

  51. K. Appelt, J. Dijk, R. Reinhardt, et al., “The crystallization of ribosomal proteins from 50S subunit of Escherichia coli and Bacillus stearothermophilus ribosome,” J. Biol Chem., 256, 11787–11790 (1981).

    CAS  Google Scholar 

  52. K. Appelt, S. W., White, and K. S., Wilson, “Proteins of the Bacillus stearothermophilus ribosome. Crystallization of proteins L30 and S5,” J. Biol Chem., 258, 13328–13330 (1983).

    CAS  Google Scholar 

  53. K. Appelt, J. Dijk, S. W., White, and K. S., Wilson, “Proteins of the Bacillus stearothermophilus ribosome. Crystallization of protein L6,” FEBS Lett., 160, 15–77 (1983).

    Google Scholar 

  54. A. Uljas and M. E., Newcomer, “Purification and crystallization of a protein complex from Bacillus stearothermophilus ribosomes,” J. Mol Biol., 153, 393–398 (1981).

    Article  Google Scholar 

  55. S. S., Abdel-Meguid, P. B., Moore, and T. A., Steitz, “Crystallization of a ribonuclease-resistant fragment of Escherichia coli 5S ribosomal RNA and its complex with protein L25,” J. Mol Bioi., 171, 207–215 (1983).

    Article  CAS  Google Scholar 

  56. K. S., Wilson, K. Appelt, J. Badger, et al., “Crystal structure of a prokaryotic ribosomal protein,” Proc. Natl. Acad. Sci. USA, 83, 7251–7255 (1986).

    Article  CAS  Google Scholar 

  57. M. M., Yusupov, S. D., Trakhanov, V. V., Barynin, et al., “Crystallization of the 30S subunit of the Thermus thermophilus ribosome,” Dokl. Akad. Nauk SSSR, 292, 1271–1274 (1987).

    Google Scholar 

  58. Z. V., Gogiya, M. M., Yusupov, and T. N., Spirina, “Structure of the Thermus thermophilus ribosome. 1. Method of isolation and purification of ribosomes,” Mol Biol (Moscow), 20, 519–526 (1986).

    CAS  Google Scholar 

Download references

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1991 Consultants Bureau, New York

About this chapter

Cite this chapter

Vainshtein, B.K., Trakhanov, S.D. (1991). Crystallization of Ribosomes, Ribosomal Subunits, and Individual Ribosomal Proteins. In: Bagdasarov, K.S., Lube, É.L. (eds) Growth of Crystals. Growth of Crystals, vol 16. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-3662-8_12

Download citation

  • DOI: https://doi.org/10.1007/978-1-4615-3662-8_12

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-0-306-18116-0

  • Online ISBN: 978-1-4615-3662-8

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics