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Characteristics of gut microbiota of premature infants in the early postnatal period and their relationship with intraventricular hemorrhage
BMC Microbiology volume 24, Article number: 513 (2024)
Abstract
Background
Studies have shown correlations between gut microbiota and neurocognitive function, but little was known about the early postnatal gut microbiota and intraventricular hemorrhage (IVH). We aimed to explore the characteristics of gut microbiota in premature infants and their relationship with IVH, further exploring potential therapeutic targets.
Methods
Premature infants delivered at Peking University First Hospital from February 2023 to August 2023 were recruited as a cohort. Feces samples were collected on postnatal days 1, 3, and 5. Premature infants were divided into normal, mild IVH, and severe IVH groups based on cranial ultrasound. 16S rRNA amplicon sequencing technology was used to determine the fecal microbiota, and the results were analyzed.
Results
Thirty-eight premature infants were enrolled. There was a significant difference in alpha and beta diversity among the three groups. The relative abundance of E. coli and A. muciniphila was different among the three groups. Further random forest analysis indicated that S. lutetiensis, L. mirabilis, and N. macacae can effectively distinguish premature infants with IVH. Finally, the phylogenetic investigation of communities by reconstruction of unobserved states2 (PICRUSt2) functional gene analysis predicted significant differences in energy metabolism, carbohydrate metabolism, metabolism of cofactors and vitamins, and membrane transport between normal and severe IVH groups.
Conclusions
The gut microbiota in the early postnatal period of premature infants is closely associated with the IVH status. As age increases, the differences in gut microbiota of premature infants with different degrees of IVH continue to increase, and the trend of changes with severity of IVH becomes more and more obvious. E. coli, A. muciniphila, S. lutetiensis, L. mirabilis, N. macacae, G. haemolysans, and S. oralis can effectively distinguish between IVH infants and normal premature infants. The results indicate that gut microbiota is expected to provide effective therapeutic targets for the diagnosis and treatment of IVH.
Background
With the improvement of neonatal critical care, the mortality of premature infants decreased markedly. However, there was no significant reduction in severe intraventricular hemorrhage (IVH) [1, 2]. IVH with an incidence of approximately 23% [3,4,5], is the most common complication of extremely premature infants [6]. The mortality rate of infants with severe IVH (grades III and IV) is approximately 10%, and could reach to 67.6–88.7% withholding and withdrawing of life-sustaining treatment in some report [7]. The cognitive or motor disorders occurring in 35 -50% of survivors. Approximately 22% of infants with mild IVH (grades I and II) will experience neurological sequelae [8]. Lacking effective prediction and intervention parameters, when infants show obvious symptoms such as seizures, they often develop into severe IVH [9].
The well-known “gut-brain axis” theory emphasizing the interaction between gut microbiota and the nervous system, has been proved in autism spectrum disorder, attention deficit hyperactivity disorder (ADHD), and many other diseases [10,11,12,13]. This bidirectional regulation is crucial for maintaining human health [14]. Studies have shown that gut microbiota may affect neurocognitive function and play a regulatory role [15,16,17,18]. After depleting the gut microbiota using antibiotic treatment from weaning onwards, mice showed significant cognitive impairment, altered dynamics of the tryptophan metabolic pathway, and significantly reduced brain-derived neurotrophic factor (BDNF), oxytocin and vasopressin expression in the adult brain [16]. Mice infected with pathogenic bacteria significantly improved their impaired memory ability after supplementing with probiotics [17]. Children with autism or ADHD often have gastrointestinal dysfunction, which can be improved by supplementing probiotics [11, 12].
Studies on infants have shown a correlation between gut microbiota and neurocognitive function. Higher alpha diversity of gut microbiota in small for gestational age (GA) infants on postnatal day 3 was found to be associated with poor communication performance at 6 months of age [19]. Another study found an association between the gut microbiota of infants aged 3–6 months and communication and fine motor skills at 3 years old [20]. The alpha diversity of gut microbiota in 1-year-old infants can predict cognitive function at 2 years old [21].
The neonatal period is critical for the colonization and development of gut microbiota, which plays an important role in promoting neural function development [21,22,23]. However, it is still unknown whether the gut microbiota of premature infants is involved in the occurrence of IVH, and the relationship between gut microbiota and IVH.
In this study, we aim to explore the characteristics of gut microbiota of IVH infants in the early postnatal period by high-throughput sequencing technology. We try to explore potential microbiota biomarkers targeting early treatment and diagnosis of post-IVH cognitive impairment in premature infants, thus improving the prognosis of premature infants with IVH.
Materials and methods
Study protocol
This study adopted a cohort design, targeting premature infants with GA < 37 weeks born at Peking University First Hospital from February to August 2023. Once enrolled, infants’ feces were collected on postnatal days 1, 3, and 5 (Day 1, Day 3, Day 5), and the fecal microbiota was determined using 16S rRNA amplicon sequencing technology. According to the cranial ultrasound result at 3 days, 1 week, and 2 weeks after birth, the enrolled infants were divided into three groups: normal, mild IVH, and severe IVH group. The severity of IVH was divided into grades I-IV using the Papile grading method, with grades I-II being mild and grades III-IV being severe. Infants were followed up regularly thereafter until corrected full-term age.
Subjects
Inclusion criteria
(a) Informed consent of the legal guardian; (b) Premature infants (GA < 37 weeks); (c) Perform cranial ultrasound examination within 1 week after birth.
Exclusion criteria
(a) Abandoning treatment due to social factors; (b) Brain injury other than IVH during the neonatal period; (c) diagnosed with other neurological diseases.
Methods
Data and sample collection
Clinical data, including gender, GA, birth weight, severity of IVH, mode of delivery, Apgar score, antenatal corticosteroid use, prenatal antibiotic exposure, early postnatal antibiotic use, early feeding methods, and complications, were collected. Fecal samples were collected on sterilized diapers by well trained nurses on Day 1, Day 3, and Day 5. Fecal samples were temporarily in an ice box and stored in sterile cryotubes at -80℃ within half an hour then transferred to laboratory using dry ice within 1 month of sample collection [24]. Samples collected from blank diapers were used for sequencing control to assess contamination.
DNA extraction and gut microbiota sequencing
This study used 16S rRNA amplicon sequencing technology to determine the fecal microbiota. The genomic DNA from fecal samples was extracted utilizing the TGuide S96 Magnetic Soil/Stool DNA Kit (Tiangen Biotech (Beijing) Co., Ltd.), following the manufacturer’s protocol. The quality and quantity of the extracted DNA were assessed by gel electrophoresis on a 1.8% agarose gel, and the DNA concentration and purity were measured using a NanoDrop 2000 UV-Vis spectrophotometer (Thermo Scientific, Wilmington, USA).
The full-length 16S rRNA gene was amplified with primer pairs 27 F: AGRGTTTGATYNTGGCTCAG and 1492R: TASGGHTACCTTGTTASGACTT. Both the forward and reverse 16S primers were tailed with sample-specific PacBio barcode sequences to allow for multiplexed sequencing. The KOD One PCR Master Mix (TOYOBOLife Science) was used to perform 25 cycles of polymerase chain reaction (PCR) amplification, with initial denaturation at 95 °C for 2 min, followed by 25 cycles of denaturation at 98 °C for 10 s, annealing at 55 °C for 30 s, and extension at 72 °C for 90 s, and a final step at 72 °C for 2 min. The total of PCR amplicons were purified with VAHTSTM DNA Clean Beads (Vazyme, Nanjing, China) and quantified using the Qubit dsDNA HS Assay Kit and Qubit 3.0 Fluorometer (Invitrogen, Thermo Fisher Scientific, Oregon, USA). After the individual quantification step, amplicons were pooled in equal amounts. SMRTbell libraries were prepared from the amplified DNA by SMRTbell Express Template Prep Kit 2.0 according to the manufacturer’s instructions (Pacific Biosciences). Purified SMRTbell libraries from the pooled and barcoded samples were sequenced on a PacBio Sequel II platform (Beijing Biomarker Technologies Co., Ltd., Beijing, China) using Sequel II binding kit 2.0.
Bioinformatics analysis
Using the SMRT Link software (version 8.0) to filter and demultiplex the raw reads generated from sequencing to obtain the circular consensus sequencing (CCS) sequences. And then using the lima (version 1.7.0) to assign the CCS sequences to the corresponding samples based on their barcodes. CCS sequences containing no primers and those reads beyond the length range (1200–1650 bp) were discarded through the recognition of forward and reverse primers and quality filtering using the Cutadapt [25] (version 2.7) quality control process. The UCHIME algorithm [26] (version 8.1) was employed in detecting and removing chimera sequences to obtain the effective CCS, which were clustered at a similarity level of 97.0% to obtain operational taxonomic units (OTU) by USEARCH [27] (version 10.0), and the OTUs counts less than 2 in all samples were filtered. The OTUs sequences were compared with the SILVA database [28] (release 138.1) based on the Naive Bayes classifier in QIIME2 [29] with a confidence threshold of 70%, in order to obtain the corresponding species’ taxonomic information. Bioinformatics analysis was conducted on the gut microbiota in all collected samples while GA and birth weight (BW) were set as environmental factors.
Alpha diversity analysis: Using QIIME2 [29] and R software to calculate and display the alpha diversity respectively. The Chao1 index measuring species richness, and the Shannon index measuring species diversity [30] of each sample were calculated. Rarefaction curves based on Shannon index were drawn to determine whether the sample size was reasonable.
Beta diversity analysis: Using QIIME to calculate the beta diversity. Principal co-ordinates analysis (PCoA) and analysis of similarities (ANOSIM) were conducted to compare the differences in species diversity, structure, and community composition between different groups [31].
Analysis of inter-group significant differences: Linear discriminant analysis effect size (LEfSe) [32] was used to obtain differential dominant microbiota in different samples. Analysis of variance (ANOVA) was used to obtain relative abundance differences. Using the randomForest function (version 4.6–10) in R software (version 3.1.1) for random forest analysis [33], to obtain key species that can distinguish different groups of samples through the MeanDecreaseGini index [34].
Association analysis: Redundancy analysis / canonical correspondence analysis (RDA/CCA analysis) was used to reflect the relationship between microbial communities or samples and environmental factors by the package vegan in R software [35].
Functional gene prediction analysis: The composition and differences of the microbial genome database Kyoto encyclopedia of genes and genomes (KEGG) metabolic pathways were analyzed in the phylogenetic investigation of communities by reconstruction of unobserved states2 (PICRUSt2) [36], to observe the differences and changes in functional genes of microbial communities in metabolic pathways among different groups of samples.
Statistical analysis
Clinical data were analyzed by IBM SPSS Statistics (Version 26.0), and graphs were drawn using GraphPad Prism (Version 8.0). Measurement data conformed to a normal distribution were expressed as mean ± standard deviation (x ± s). For comparison between two groups, Student’s t-test was used, otherwise using ANOVA analysis. Measurement data not conformed to a normal distribution were represented by the median (P25, P75). For comparison between two groups, the Mann Whitney U test was used, otherwise using the Kruskal Wallis H test. Comparison between enumeration data groups was performed using χ 2 test. For the correlation analysis of two quantitative datasets, Pearson correlation analysis was used if they conform to a bivariate normal distribution, otherwise using Spearman correlation analysis. P < 0.05 indicated a statistically significant difference.
Results
Clinical information
Thirty-eight premature infants were enrolled, including 21 in the normal group, 8 in the mild IVH group, and 9 in the severe IVH group (shown in Table 1). There were significant differences (p < 0.05) in day of life (DOL) of first maternally expressed breast milk (MEBM), total enteral feeding time, and respiratory support (number of pulmonary surfactants uses, invasive ventilator use, and oxygen uptake time), but no statistically significant difference in prenatal and delivery history among different groups. In terms of complications, there were significant differences in the hemodynamic significance of patent ductus arteriosus (PDA) and bronchopulmonary dysplasia among different groups, but no significant difference in the incidence of neonatal necrotizing enterocolitis and premature retinopathy.
One hundred one fecal samples were collected from 38 premature infants, including 33 samples on Day 1 (21 in the normal group, 5 in the mild group, and 7 in the severe group), 33 samples on Day 3 (20 in the normal group, 6 in the mild group, and 7 in the severe group), and 35 samples on Day 5 (20 in the normal group, 6 in the mild group, and 9 in the severe group). In total, there were 61 in the normal group, 17 in the mild IVH group, and 23 in the severe IVH group (shown in Supplementary Table 1).
Gut microbiota analysis
In this study, each sample generated at least 8,457 CCS sequences, with an average of 12,859 CCS sequences and 12,658 effective CCS sequences after processing. 4,617 OTUs were obtained at the clustering similarity level of 97.0%. Samples collected from blank diapers were conducted as the negative control. The negative control group did not show any bands after DNA extraction and amplification, so 16s rRNA sequencing analysis was not performed.
Adequacy judgment of sample sequencing quantity
All Rarefaction curves based on Shannon index in this study tended to flatten out (shown in Supplementary Fig. 1), indicating the sample sequence was sufficient for data analysis.
Alpha diversity analysis
As shown in Fig. 1. a-b, we found there was no significant difference in alpha diversity between the normal, mild IVH and severe IVH group on Day 1. When it comes to Day 3, alpha diversity between different groups began to differ. There was a significant difference in species richness between the normal and severe IVH group, but no significant difference in species diversity among the three groups. When the time reaches Day 5, the difference in alpha diversity between different groups becomes more significant. There was a significant difference in species richness between the normal and IVH group (mild and severe IVH group), and a significant difference in species diversity between the severe IVH group and the other two groups. In addition, we found that as age increased, the trend of alpha diversity changing with the severity of IVH became more and more obvious, that is, as the severity of IVH increased, alpha diversity continued to increase.
Interestingly, we found that the changes in alpha diversity with age varied among different IVH groups: in the severe group, the alpha diversity of gut microbiota did not change with age, while the normal group and mild IVH group showed a trend of decreasing diversity with age.
Beta diversity analysis
As shown in Fig. 1. c, through PCoA and ANOSIM analysis, we found differences in the beta diversity of gut microbiota in premature infants with different IVH severity levels on Day 1 (R = 0.313, p = 0.016), Day 3 (R = 0.025, p = 0.335), and Day 5 (R = 0.279, p = 0.002). These results indicate there were differences in the community composition and structure of gut microbiota in premature infants with different IVH severity levels. Further analysis of inter-group significant differences can be conducted.
Analysis of inter-group significant differences
In terms of the relative abundance of gut microbiota, the species composition of the normal, mild, and severe IVH group at the phylum, genus, and species levels are shown in Fig. 2, and the species composition of all 101 samples at the phylum, genus, and species levels are shown in Supplementary Fig. 2. The Firmicutes, Proteobacteria, and Bacteroidota were common major three phyla, and Enterococcus, Escherichia Shigella, and Achromobacter were common major three genera in all groups. At the species level, comparing the community composition and structure of gut microbiota in preterm infants with different IVH severity levels (LDA > 3), we found that there were differences in E. coli and A. muciniphila among the three groups (shown in Fig. 3). Among them, as the severity of IVH deepened, the relative abundance of E. coli continued to increase, and the relative abundance of A. muciniphila in preterm infants with IVH is lower than that in normal premature infants (shown in Fig. 3. d-f).
The analysis of inter-group significant differences between normal, mild, and severe groups. The differential dominant microorganisms obtained through LEfSe analysis based on (a) 33 samples collected on Day 1, (b) 33 samples collected on Day 3, and (c) 35 samples collected on Day 5. Differences in the relative abundance of species at the species level obtained through ANOVA analysis based on (d) 33 samples collected on Day 1, (e) 33 samples collected on Day 3, and (f) 35 samples collected on Day 5
We conducted random forest analysis on the gut microbiota at the species level based on all 101 samples, to identify key species that have a significant impact on the differences in gut microbiota between normal preterm infants and preterm infants with IVH. We found that S. lutetiensis, L. mirabilis, N. macacae, G. haemolysans, and S. oralis were important in distinguishing between the two groups (shown in Fig. 4. a). Therefore, we constructed the best classifier model using the above five bacteria and the 2 major diverse bacteria (E. coli and A. muciniphila) to conduct a leave-one-out cross-validation (LOOCV). The area under curve (AUC) analysis results indicate that the above seven bacteria can effectively distinguish IVH premature infants from normal preterm infants (shown in Fig. 4. b).
Association analysis and functional gene prediction analysis
We also analyzed the association of gut microbiota among the normal, mild, and severe IVH groups (shown in Fig. 4. c-e). We found a certain correlation between these two environmental factors, BW and GA, and the gut microbiota of premature infants on Day 1, Day 3, and Day 5. By predicting the functional abundance of gut microbiota in premature infants with different IVH severity levels, we found significant differences in energy metabolism, carbohydrate metabolism, metabolism of cofactors and vitamins, and membrane transport between the normal and severe IVH groups (shown in Fig. 4. f). Among them, the mean proportion of carbohydrate metabolism and membrane transport in the normal group is higher than that in the severe IVH group, while the mean proportion of energy metabolism and metabolism of cofactors and vitamins is lower than that in the severe IVH group.
The association analysis, together with functional gene prediction analysis. (a) The random forest analysis at the species level. (b) ROC curves and their corresponding AUCs employing 7 species. The RDA/CCA analysis of GA and BW environmental factors at the species level on (c) Day 1, (d) Day 3, and (e) Day 5. (f) The functional difference diagram of PICRUSt2 function prediction based on KEGG
Discussion
As the most common brain injury in premature infants, IVH currently lacks effective methods for screening and identifying high-risk populations before injury occurs, and the relationship between IVH and cognitive impairment mechanisms is still unclear, lacking effective methods for early intervention to improve prognosis. Recently, studies have shown a close relationship between gut microbiota and brain development and cognitive function [37]. The imbalance of gut microbiota in the early postnatal period may disrupt brain development through the “gut-brain axis”, leading to brain injury [38]. However, there is little research on whether the gut microbiota is involved in the occurrence of IVH, and the relationship between IVH and gut microbiota. This study utilized high-throughput sequencing technology to investigate the characteristics of gut microbiota in the early postnatal period and the relationship between IVH and gut microbiota in premature infants with different IVH severity levels. It was found that there was a close relationship between the two, and a significant difference in gut microbiota among premature infants with different IVH severity levels. The results of this study are of great significance for exploring new clinical risk assessment biomarkers, exploring new safe and effective therapeutic targets, and improving the cognitive and developmental prognosis of premature infants with IVH.
In this study, we found that the gut microbiota of premature infants in the early postnatal period is closely associated with the IVH status, and the presence or absence of IVH has the greatest impact on the gut microbiota. We found that there were differences in the gut microbiota of premature infants with different IVH severity within Day 5 in terms of alpha diversity, beta diversity, differential dominant microbiota, and relative abundance. Among them, compared to normal premature infants, the alpha diversity in the premature infants with IVH was significantly increased, but no differences in alpha diversity were found between mild and severe IVH premature infants. In addition, we also found that as age increases, the differences in gut microbiota of premature infants with different degrees of IVH continue to increase, and the trend of changes with severity of IVH becomes more and more obvious.
Previous studies have suggested that early fecal samples from premature infants are dominated by Firmicutes, gradually transitioning to Proteobacteria, while the relative abundance of Enterobacteriaceae, including Klebsiella and Escherichia, is higher than that of Bifidobacterium [39]. The results of this study are consistent with the previous reports.
The differential analysis of different IVH groups in this study using LEfSe revealed that E. coli and A. muciniphila are the main differential bacteria between the IVH and normal groups. Combining the random forest model to predict different IVH, it was found that there was a good ROC curve. Therefore, we can use these bacteria to accurately predict and identify potential IVH infants. Previous studies have found that E. coli can produce short-chain fatty acids and metabolites such as lactic acid and acetic acid [40]. E. coli has an inhibitory effect on intestinal inflammation and can also assist the host in producing nitrates, inhibiting the growth of Pseudomonas aeruginosa [41, 42]. Acinetobacter albensis was first identified from water and soil and has not been reported in the gut microbiota. However, in the study of the gut microbiota in patients with multiple sclerosis, it was found that Acinetobacter calcoaceticus, also belonging to the Acinetobacter genus, has a significant increase in relative abundance in the gut microbiota of patients with multiple sclerosis. The genus Akkermansia has been shown to appear in the first year of life and to gradually increase in abundance until adulthood [43]. Caloric restriction or starvation increases the abundance of A. muciniphila in the human and animal gut. A. muciniphila has proven efficacy to improve obesity, type 2 and type 1 diabetes mellitus, hepatic steatosis, intestinal inflammation and different cancers (colon cancer, response to immune checkpoints) in mice. In vitro, protein 9 (P9) activate the enteroendocrine L cells and stimulates glucagon-like peptide-1 (GLP1) and regulate inflammation, fatty acid oxidation and glucose metabolism [44]. Interestingly, the functional abundance of gut microbiota showed significant difference in energy metabolism, carbohydrate metabolism, membrane transport, and the metabolism of cofactors and vitamins. These differences suggest that the gut microbiota of preterm infants with severe IVH may have altered metabolic capabilities, potentially affecting the overall energy balance and nutrient absorption. Alterations in carbohydrate metabolism could impact the availability of essential nutrients required for growth and development, while changes in membrane transport and cofactor metabolism could influence the gut’s ability to maintain homeostasis and respond to environmental challenges.
Future study focusing on stool metabolome could help reveal the key molecular that involved in related metabolic pathways. Experimental models, including germ-free and gnotobiotic animal models, could be employed to dissect the underlying biological mechanisms. Integrating multi-omics approaches, including genomics, transcriptomics, proteomics, and metabolomics, will offer a holistic view of the host-microbiota interactions. This could lead to the identification of novel biomarkers for early diagnosis and personalized therapeutic strategies. It is expected to provide important insights for further exploring potential new methods based on gut microbiota and its metabolites for identifying high-risk populations for possible brain injury, exploring new safe and effective therapeutic targets, and improving the cognitive and developmental prognosis of premature infants with IVH.
However, there were also some limitations of our study. This study is currently a single-center study, and there may be differences in gut microbiota in the early postnatal period of premature infants from other hospitals, including those with IVH, which needs to be validated through multicenter studies. In addition, this study only explored the characteristics and differences of gut microbiota in premature infants with different degrees of IVH, and has not yet conducted research on the relationship between long-term prognosis and gut microbiota characteristics. In future research, follow-up can be conducted for this cohort, and it is expected to discover a correlation analysis between early gut microbiota and IVH prognosis.
Conclusions
The gut microbiota in the early postnatal period of premature infants is closely associated with the IVH status. As age increases, the differences in gut microbiota of premature infants with different degrees of IVH continue to increase, and the trend of changes with severity of IVH becomes more and more obvious. E. coli, A. muciniphila, S. lutetiensis, L. mirabilis, N. macacae, G. haemolysans, and S. oralis can effectively distinguish between IVH infants and normal premature infants. The results indicate that gut microbiota is expected to provide effective therapeutic targets for the diagnosis and treatment of IVH.
Data availability
The datasets (Clean-CCS) analyzed during the current study are available in the NCBI repository, http://www.ncbi.nlm.nih.gov/bioproject/1086214.
Abbreviations
- ADHD:
-
Attention deficit hyperactivity disorder
- ANOSIM:
-
Analysis of similarities
- ANOVA:
-
Analysis of variance
- AUC:
-
Area under curve
- BDNF:
-
Brain-derived neurotrophic factor
- CCS:
-
Circular consensus sequencing
- Day:
-
Postnatal day
- DOL:
-
Day of life
- GA:
-
Gestational age
- GLP1:
-
Glucagon-like peptide-1
- IVH:
-
Intraventricular hemorrhage
- KEGG:
-
Kyoto encyclopedia of genes and genomes
- LefSe:
-
Linear discriminant analysis effect size
- LOOCV:
-
Leave-one-out cross-validation
- MEBM:
-
Maternally expressed breast milk
- OTU:
-
Operational taxonomic unit
- PCoA:
-
Principal co-ordinates analysis
- PCR:
-
Polymerase chain reaction
- PDA:
-
Patent ductus arteriosus
- PICRUSt2:
-
Phylogenetic investigation of communities by reconstruction of unobserved states2
- RDA/CCA analysis:
-
Redundancy analysis / canonical correspondence analysis
References
Stensvold HJ, Klingenberg C, Stoen R, Moster D, Braekke K, Guthe HJ et al. Neonatal morbidity and 1-year survival of extremely preterm infants. Pediatrics. 2017;139(3).
Stoll BJ, Hansen NI, Bell EF, Walsh MC, Carlo WA, Shankaran S, et al. Trends in care practices, morbidity, and mortality of extremely preterm neonates, 1993–2012. JAMA. 2015;314(10):1039–51.
Handley SC, Passarella M, Lee HC, Lorch SA. Incidence trends and risk factor variation in severe intraventricular hemorrhage across a population based cohort. J Pediatr. 2018;200:24–9. e3.
Alotaibi WSM, Alsaif NS, Ahmed IA, Mahmoud AF, Ali K, Hammad A, et al. Reduction of severe intraventricular hemorrhage, a tertiary single-center experience: incidence trends, associated risk factors, and hospital policy. Child’s Nerv Syst. 2020;36:2971–9.
Gilard V, Tebani A, Bekri S, Marret S. Intraventricular hemorrhage in very preterm infants: a comprehensive review. J Clin Med. 2020;9(8):2447.
Gale C, Statnikov Y, Jawad S, Uthaya SN, Modi N. Neonatal brain injuries in England: population-based incidence derived from routinely recorded clinical data held in the national neonatal research database. Archives Disease Childhood-Fetal Neonatal Ed. 2018;103(4):F301–6.
Tréluyer L, Chevallier M, Jarreau P-H, Baud O, Benhammou V, Gire C, et al. Intraventricular hemorrhage in very preterm children: mortality and neurodevelopment at age 5. Pediatrics. 2023;151(4):e2022059138.
Périsset A, Natalucci G, Adams M, Karen T, Bassler D, Hagmann C. Impact of low-grade intraventricular hemorrhage on neurodevelopmental outcome in very preterm infants at two years of age. Early Hum Dev. 2023;177:105721.
Parodi A, Giordano I, De Angelis L, Malova M, Calevo MG, Preiti D, et al. Post-haemorrhagic hydrocephalus management: delayed neonatal transport negatively affects outcome. Acta Paediatr. 2021;110(1):168–70.
Collins SM, Surette M, Bercik P. The interplay between the intestinal microbiota and the brain. Nat Rev Microbiol. 2012;10(11):735–42.
Checa-Ros A, Jeréz-Calero A, Molina-Carballo A, Campoy C, Muñoz-Hoyos A. Current evidence on the role of the gut microbiome in ADHD pathophysiology and therapeutic implications. Nutrients. 2021;13(1):249.
Srikantha P, Mohajeri MH. The possible role of the microbiota-gut-brain-axis in autism spectrum disorder. Int J Mol Sci. 2019;20(9):2115.
Mazzone L, Dooling SW, Volpe E, Uljarević M, Waters JL, Sabatini A, et al. Precision microbial intervention improves social behavior but not autism severity: a pilot double-blind randomized placebo-controlled trial. Cell Host & Microbe. 2023.
Osadchiy V, Martin CR, Mayer EA. The gut–brain axis and the microbiome: mechanisms and clinical implications. Clin Gastroenterol Hepatol. 2019;17(2):322–32.
Quigley EM. Microbiota-brain-gut axis and neurodegenerative diseases. Curr Neurol Neurosci Rep. 2017;17:1–9.
Desbonnet L, Clarke G, Traplin A, O’Sullivan O, Crispie F, Moloney RD, et al. Gut microbiota depletion from early adolescence in mice: implications for brain and behaviour. Brain Behav Immun. 2015;48:165–73.
Gareau MG, Wine E, Rodrigues DM, Cho JH, Whary MT, Philpott DJ, et al. Bacterial infection causes stress-induced memory dysfunction in mice. Gut. 2011;60(3):307–17.
Sudo N, Chida Y, Aiba Y, Sonoda J, Oyama N, Yu XN, et al. Postnatal microbial colonization programs the hypothalamic–pituitary–adrenal system for stress response in mice. J Physiol. 2004;558(1):263–75.
Chen X, Yan Z, Liu L, Zhang R, Zhang X, Peng C, et al. Characteristics of gut microbiota of term small gestational age infants within 1 week and their relationship with neurodevelopment at 6 months. Front Microbiol. 2022;13:912968.
Sordillo JE, Korrick S, Laranjo N, Carey V, Weinstock GM, Gold DR, et al. Association of the infant gut microbiome with early childhood neurodevelopmental outcomes: an ancillary study to the VDAART randomized clinical trial. JAMA Netw open. 2019;2(3):e190905–e.
Carlson AL, Xia K, Azcarate-Peril MA, Goldman BD, Ahn M, Styner MA, et al. Infant gut microbiome associated with cognitive development. Biol Psychiatry. 2018;83(2):148–59.
Milani C, Duranti S, Bottacini F, Casey E, Turroni F, Mahony J, et al. The first microbial colonizers of the human gut: composition, activities, and health implications of the infant gut microbiota. Microbiol Mol Biol Rev. 2017;81(4). https://doi.org/10.1128/mmbr.00036-17
Al-Asmakh M, Anuar F, Zadjali F, Rafter J, Pettersson S. Gut microbial communities modulating brain development and function. Gut Microbes. 2012;3(4):366–73.
Chen T, Qin Y, Chen M, Zhang Y, Wang X, Dong T, et al. Gestational diabetes mellitus is associated with the neonatal gut microbiota and metabolome. BMC Med. 2021;19:1–10.
Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for illumina sequence data. Bioinformatics. 2014;30(15):2114–20.
Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J. 2011;17(1):10–2.
Edgar RC. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods. 2013;10(10):996–8.
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 2012;41(D1):D590–6.
Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019;37(8):852–7.
Kim B-R, Shin J, Guevarra RB, Lee JH, Kim DW, Seol K-H, et al. Deciphering diversity indices for a better understanding of microbial communities. J Microbiol Biotechnol. 2017;27(12):2089–93.
Li Y, Evans NT, Renshaw MA, Jerde CL, Olds BP, Shogren AJ, et al. Estimating fish alpha-and beta-diversity along a small stream with environmental DNA metabarcoding. Metabarcoding Metagenomics. 2018;2:e24262.
Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, et al. Metagenomic biomarker discovery and explanation. Genome Biol. 2011;12:1–18.
Geng J, Sui Z, Dou W, Miao Y, Wang T, Wei X, et al. 16S rRNA gene sequencing reveals specific gut microbes common to medicinal insects. Front Microbiol. 2022;13:892767.
Namkung J. Machine learning methods for microbiome studies. J Microbiol. 2020;58(3):206–16.
Zhang B, Yu Q, Yan G, Zhu H, Xu XY, Zhu L. Seasonal bacterial community succession in four typical wastewater treatment plants: correlations between core microbes and process performance. Sci Rep. 2018;8(1):4566.
Douglas GM, Maffei VJ, Zaneveld JR, Yurgel SN, Brown JR, Taylor CM, et al. PICRUSt2 for prediction of metagenome functions. Nat Biotechnol. 2020;38(6):685–8.
Cohen Kadosh K, Muhardi L, Parikh P, Basso M, Jan Mohamed HJ, Prawitasari T, et al. Nutritional support of neurodevelopment and cognitive function in infants and young children—an update and novel insights. Nutrients. 2021;13(1):199.
Cryan JF, O’Riordan KJ, Cowan CS, Sandhu KV, Bastiaanssen TF, Boehme M et al. The microbiota-gut-brain axis. Physiol Rev. 2019;99:1877–2013.
Healy DB, Ryan CA, Ross RP, Stanton C, Dempsey EM. Clinical implications of preterm infant gut microbiome development. Nat Microbiol. 2022;7(1):22–33.
Christofi T, Panayidou S, Dieronitou I, Michael C, Apidianakis Y. Metabolic output defines Escherichia coli as a health-promoting microbe against intestinal Pseudomonas aeruginosa. Sci Rep. 2019;9(1):14463.
Mitsuoka T. Intestinal flora and human health. Asia Pac J Clin Nutr. 1996;5(1):2–9.
Winter SE, Winter MG, Xavier MN, Thiennimitr P, Poon V, Keestra AM, et al. Host-derived nitrate boosts growth of E. Coli in the inflamed gut. Science. 2013;339(6120):708–11.
Collado MC, Derrien M, Isolauri E, de Vos WM, Salminen S. Intestinal integrity and Akkermansia muciniphila, a mucin-degrading member of the intestinal microbiota present in infants, adults, and the elderly. Appl Environ Microbiol. 2007;73(23):7767–70.
Abbasi A, Bazzaz S, Da Cruz AG, Khorshidian N, Saadat YR, Sabahi S et al. A critical review on Akkermansia muciniphila: functional mechanisms, technological challenges, and safety issues. Probiotics Antimicrob Proteins. 2024:16(4),1376-1398.
Funding
This study was supported by the Beijing Natural Science Foundation-Haidian Original Innovation Joint Fund (2022L222016), National High Level Hospital Clinical Research Funding (High Quality Clinical Research Project of Peking University First Hospital, 2022CR68), National Key Research and Development Program of China (2021YFC2700700), and Capital’s Funds for Health Improvement and Research (2022-3-40715).
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Yunlong Zhao: Conceptualization, Methodology, Formal analysis, Writing - Original Draft, Visualization. Shan Li: Conceptualization, Methodology, Investigation, Writing - Original Draft, Data Curation. Rui Zhang: Methodology, Investigation. Xin Zhang: Methodology, Investigation. Qiuyue Shen: Investigation, Data Curation. Xingyun Zhang: Investigation, Data Curation. Tian Tian: Investigation, Data Curation. Xinlin Hou: Conceptualization, Writing - Review & Editing, Supervision, Funding acquisition.
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This study was approved by the Ethics Committee of the Peking University First Hospital (2022 Research 587-002). The legal guardians of each participant provided written informed consent.
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The authors declare no competing interests.
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Zhao, Y., Li, S., Zhang, R. et al. Characteristics of gut microbiota of premature infants in the early postnatal period and their relationship with intraventricular hemorrhage. BMC Microbiol 24, 513 (2024). https://doi.org/10.1186/s12866-024-03675-w
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DOI: https://doi.org/10.1186/s12866-024-03675-w