Abstract
The a- and b-globin gene clusters are subject to several levels of regulation. They are expressed exclusively in the erythroid cells, only during defined periods of development and in a perfectly tuned way, assuring, at any stage of ontogeny, a correct balance in the availability of a- and b-globin chains for hemoglobin assembling. Such a tight control is dependent on regulatory regions of DNA located either in proximity or at great distances from the globin genes in a region characterized by the presence of several DNAse I hypersensitive sites and known as the Locus Control Region. All these sequences exert stimulatory, inhibitory or more complex activities by interacting with transcription factors that bridge these regions of DNA to the RNA polymerase machinery. Many of these factors have now been cloned and the corresponding mouse genes inactivated, shading new light on the metabolic pathways they control. It is increasingly recognized that such factors are organized into hierarchies according to the number of genes and circuits they regulate. Some genes such as GATA-1 and 2 are master regulators that act on large numbers of genes at early stage of differentiation whereas others, like EKLF, stand on the lowest step and control only single or limited number of genes at late stages of differentiation. We will review recent data gathered from expression studies in cell cultures, in transgenic or K.O. murine models as well as from a clinical settings. We will also discuss the development of novel theories on the regulation of the a- and b-globin genes and clusters.
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Abbreviations
- HSC:
-
hematopoietic stem cell
- LCR:
-
locus control region
- HS:
-
(DNase I) hypersensitive site
- Fog:
-
friend of GATA-1
- NF-E:
-
nuclear factor erythroid
- EKLF:
-
erythroid Kruppel-like factor
- FKLF:
-
fetal Kruppel-like factor
- SSE:
-
stage selector element
- SSP:
-
SSE binding protein
- CP2:
-
Caat binding protein 2
- COUP-TFII:
-
chicken ovalbumin upstream promoter–transcription factor II
- XPD:
-
xeroderma pigmentosum D
- ATR-X:
-
α-thalassemia-mental retardation X-linked
- SWI/SNF:
-
switching and/or sucrose nonfermentor
References
Muirhead H, Cox JM, Mazzarella L, Perutz MF 1967 Structure and function of haemoglobin. 3. A three-dimensional Fourier synthesis of human deoxyhaemoglobin at 5.5 Angstrom resolution. J Mol Biol 28: 117–156
Rabbitts TH 1976 Bacterial cloning of plasmids carrying copies of rabbit globin messenger RNA. Nature 260: 221–225
Ingram V 1957 Gene mutations in human hemoglobin: the chemical difference between normal and sickle cell hemoglobin. Nature 180: 326–328
Kan YW, Dozy AM 1978 Polymorphism of DNA sequence adjacent to human beta-globin structural gene: relationship to sickle mutation. Proc Natl Acad Sci U S A 75: 5631–5635
Kan YW, Dozy AM 1978 Antenatal diagnosis of sickle-cell anaemia by D.N.A. analysis of amniotic-fluid cells. Lancet 2: 910–912
Myers RM, Tilly K, Maniatis T 1986 Fine structure genetic analysis of a beta-globin promoter. Science 232: 613–618
Grosveld F, van AG, Greaves DR, Kollias G 1987 Position-independent, high-level expression of the human beta-globin gene in transgenic mice. Cell 51: 975–985
Stamatoyannopoulos G, Grosveld F 2001 Hemoglobin switching. In: Stamatoyannopoulos G, Perlmutter R, Majerus W, Varmus H (eds) The Molecular Basis of Blood Diseases. Saunders, Philadelphia, 135–165
Lodish HF, Jacobsen M 1972 Regulation of hemoglobin synthesis. Equal rates of translation and termination of α and β globin chains. J Biol Chem 247: 3622–3629
Jane SM, Ney PA, Vanin EF, Gumucio DL, Nienhuis AW 1992 Identification of a stage selector element in the human gamma-globin gene promoter that fosters preferential interaction with the 5′ HS2 enhancer when in competition with the beta-promoter. EMBO J 11: 2961–2969
Li Q, Harju S, Peterson KR 1999 Locus control regions: coming of age at a decade plus. Trends Genet 15: 403–408
Grosveld F 1999 Activation by locus control regions?. Curr Opin Genet Dev 9: 152–157
Lowrey CH, Bodine DM, Nienhuis AW 1992 Mechanism of DNase I hypersensitive site formation within the human globin locus control region. Proc Natl Acad Sci U S A 89: 1143–1147
Fraser P, Pruzina S, Antoniou M, Grosveld F 1993 Each hypersensitive site of the human beta-globin locus control region confers a different developmental pattern of expression on the globin genes. Genes Dev 7: 106–113
Anderson KP, Lloyd JA, Ponce E, Crable SC, Neumann JC, Lingrel JB 1993 Regulated expression of the human beta globin gene in transgenic mice requires an upstream globin or nonglobin promoter. Mol Biol Cell 4: 1077–1085
Grosveld F, de Boer E, Dillon N, Fraser P, Gribnau J, Milot E, Trimborn T, Wijgerde M 1998 The dynamics of globin gene expression and gene therapy vectors. Semin Hematol 35: 105–111
Hanscombe O, Whyatt D, Fraser P, Yannoutsos N, Greaves D, Dillon N, Grosveld F 1991 Importance of globin gene order for correct developmental expression. Genes Dev 5: 1387–1394
Dillon N, Trimborn T, Strouboulis J, Fraser P, Grosveld F 1997 The effect of distance on long-range chromatin interactions. Mol Cell 1: 131–139
Nuez B, Michalovich D, Bygrave A, Ploemacher R, Grosveld F 1995 Defective haematopoiesis in fetal liver resulting from inactivation of the EKLF gene. Nature 375: 316–318
Perkins AC, Sharpe AH, Orkin SH 1995 Lethal beta-thalassaemia in mice lacking the erythroid CACCC- transcription factor EKLF. Nature 375: 318–322
Perkins AC, Gaensler KM, Orkin SH 1996 Silencing of human fetal globin expression is impaired in the absence of the adult beta-globin gene activator protein EKLF. Proc Natl Acad Sci U S A 93: 12267–12271
Wijgerde M, Grosveld F, Fraser P 1995 Transcription complex stability and chromatin dynamics in vivo. Nature 377: 209–213
Tanimoto K, Liu Q, Bungert J, Engel JD 1999 Effects of altered gene order or orientation of the locus control region on human beta-globin gene expression in mice. Nature 398: 344–348
Li Q, Stamatoyannopoulos G 1994 Hypersensitive site 5 of the human beta locus control region functions as a chromatin insulator. Blood 84: 1399–1401
Bell AC, Felsenfeld G 2000 Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene [see comments]. Nature 405: 482–485
Bender MA, Bulger M, Close J, Groudine M 2000 Beta-globin gene switching and DNase I sensitivity of the endogenous beta-globin locus in mice do not require the locus control region. Mol Cell 5: 387–393
Long Q, Bengra C, Li C, Kutlar F, Tuan D 1998 A long terminal repeat of the human endogenous retrovirus ERV-9 is located in the 5′ boundary area of the human beta-globin locus control region. Genomics 54: 542–555
Ashe HL, Monks J, Wijgerde M, Fraser P, Proudfoot NJ 1997 Intergenic transcription and transinduction of the human beta-globin locus. Genes Dev 11: 2494–2509
Tuan DY, Solomon WB, London IM, Lee DP 1989 An erythroid-specific, developmental-stage-independent enhancer far upstream of the human “beta-like globin” genes. Proc Natl Acad Sci U S A 86: 2554–2558
Moi P, Kan YW 1990 Synergistic enhancement of globin gene expression by activator protein-1-like proteins. Proc Natl Acad Sci U S A 87: 9000–9004
Ney PA, Sorrentino BP, McDonagh KT, Nienhuis AW 1990 Tandem AP-1-binding sites within the human beta-globin dominant control region function as an inducible enhancer in erythroid cells. Genes Dev 4: 993–1006
Wheatherall D, Clegg J 1981 The Thalassemia Syndromes. Blackwell Scientific Oxford, UK,
Miller IJ, Bieker JJ 1993 A novel, erythroid cell-specific murine transcription factor that binds to the CACCC element and is related to the Kruppel family of nuclear proteins. Mol Cell Biol 13: 2776–2786
Asano H, Stamatoyannopoulos G 1998 Activation of beta-globin promoter by erythroid Kruppel-like factor. Mol Cell Biol 18: 102–109
Donze D, Townes TM, Bieker JJ 1995 Role of erythroid Kruppel-like factor in human gamma- to beta-globin gene switching. J Biol Chem 270: 1955–1959
Bieker JJ 1996 Isolation, genomic structure, and expression of human erythroid Kruppel- like factor (EKLF). DNA Cell Biol 15: 347–352
Asano H, Li XS, Stamatoyannopoulos G 1999 FKLF, a novel Kruppel-like factor that activates human embryonic and fetal beta-like globin genes. Mol Cell Biol 19: 3571–3579
Asano H, Li XS, Stamatoyannopoulos G 2000 FKLF-2: a novel Kruppel-like transcriptional factor that activates globin and other erythroid lineage genes. Blood 95: 3578–3584
Jane SM, Amrolia P, Cunningham JM 1995 Developmental regulation of the human beta-globin cluster. Aust N Z J Med 25: 865–869
Jane SM, Nienhuis AW, Cunningham JM 1995 Hemoglobin switching in man and chicken is mediated by a heteromeric complex between the ubiquitous transcription factor CP2 and a developmentally specific protein [published erratum appears in EMBO J 1995 Feb 15;14(4):854]. EMBO J 14: 97–105
Ristaldi MS, Drabek D, Gribnau J, Poddie D, Yannoutsous N, Cao A, Grosveld F, Imam AM 2001 The role of the -50 region of the human gamma-globin gene in switching. Embo J 20: 5242–5249
Zhou W, Clouston DR, Wang X, Cerruti L, Cunningham JM, Jane S M 2000 Induction of human fetal globin gene expression by a novel erythroid factor, NF-E4. Mol Cell Biol 20: 7662–7672
Ramamurthy L, Barbour V, Tuckfield A, Clouston DR, Topham D, Cunningham JM, Jane SM 2001 Targeted disruption of the CP2 gene, a member of the NTF family of transcription factors. J Biol Chem 276: 7836–7842
Ritchie HH, Wang LH, Tsai S, O'Malley BW, Tsai MJ 1990 COUP-TF gene: a structure unique for the steroid/thyroid receptor superfamily. Nucleic Acids Res 18: 6857–6862
Ronchi A, Berry M, Raguz S, Imam A, Yannoutsos N, Ottolenghi S, Grosveld F, Dillon N 1996 Role of the duplicated CCAAT box region in gamma-globin gene regulation and hereditary persistence of fetal haemoglobin. EMBO J 15: 143–149
Ottolenghi S, Mantovani R, Nicolis S, Ronchi A, Giglioni B 1989 DNA sequences regulating human globin gene transcription in nondeletional hereditary persistence of fetal hemoglobin. Hemoglobin 13: 523–541
Filipe A, Li Q, Deveaux S, Godin I, Romeo PH, Stamatoyannopoulos G, Mignotte V 1999 Regulation of embryonic/fetal globin genes by nuclear hormone receptors: a novel perspective on hemoglobin switching. EMBO J 18: 687–697
Vitale M, Di Marzo R, Calzolari R, Acuto S, O'Neill D, Bank A, Maggio A 1994 Evidence for a globin promoter-specific silencer element located upstream of the human delta-globin gene. Biochem Biophys Res Commun 204: 413–418
Acuto S, Urzi G, Schimmenti S, Maggio A, O'Neill D, Bank A 1996 An element upstream from the human delta-globin-encoding gene specifically enhances beta-globin reporter gene expression in murine erythroleukemia cells. Gene 168: 237–241
O'Neill D, Yang J, Erdjument-Bromage H, Bornschlegel K, Tempst P, Bank A 1999 Tissue-specific and developmental stage-specific DNA binding by a mammalian SWI/SNF complex associated with human fetal-to-adult globin gene switching. Proc Natl Acad Sci U S A 96: 349–354
Georgopoulos K 1997 Transcription factors required for lymphoid lineage commitment. Curr Opin Immunol 9: 222–227
Little JA, Dempsey NJ, Tuchman M, Ginder GD 1995 Metabolic persistence of fetal hemoglobin. Blood 85: 1712–1718
Ikuta T, Cappellini M 1999 A novel mechanism for fetal globin gene expression: role of the soluble guanylate cyclase-cyclic GMP pathway. Blood 94: 615
Higgs DR, Sharpe JA, Wood WG 1998 Understanding alpha globin gene expression: a step towards effective gene therapy. Semin Hematol 35: 93–104
Albitar M, Katsumata M, Liebhaber SA 1991 Human alpha-globin genes demonstrate autonomous developmental regulation in transgenic mice. Mol Cell Biol 11: 3786–3794
Watt P, Lamb P, Proudfoot NJ 1993 Distinct negative regulation of the human embryonic globin genes zeta and epsilon. Gene Expr 3: 61–75
Huisman T, Carver M, Baysal E 1997 A Syllabus of Thalassemia Mutations. The Sickle Cell Anemia Foundation, Augusta, GA, USA
Faustino P, Lavinha J, Marini MG, Moi P 1996 beta-Thalassemia mutation at −90C–>T impairs the interaction of the proximal CACCC box with both erythroid and nonerythroid factors [letter]. Blood 88: 3248–3249
Feng WC, Southwood CM, Bieker JJ 1994 Analyses of beta-thalassemia mutant DNA interactions with erythroid Kruppel-like factor (EKLF), an erythroid cell-specific transcription factor. J Biol Chem 269: 1493–1500
Martin DI, Tsai SF, Orkin SH 1989 Increased gamma-globin expression in a nondeletion HPFH mediated by an erythroid-specific DNA-binding factor. Nature 338: 435–438
Moi P, Loudianos G, Lavinha J, Murru S, Cossu P, Casu R, Oggiano L, Longinotti M, Cao A, Pirastu M 1992 Delta-thalassemia due to a mutation in an erythroid-specific binding protein sequence 3′ to the delta-globin gene. Blood 79: 512–516
Miyoshi K, Kaneto Y, Kawai H, Ohchi H, Niki S, Hasegawa K, Shirakami A, Yamano T 1988 X-linked dominant control of F-cells in normal adult life: characterization of the Swiss type as hereditary persistence of fetal hemoglobin regulated dominantly by gene(s) on X chromosome. Blood 72: 1854–1860
Garner C, Mitchell J, Hatzis T, Reittie J, Farrall M, Thein SL 1998 Haplotype mapping of a major quantitative-trait locus for fetal hemoglobin production, on chromosome 6q23. Am J Hum Genet 62: 1468–1474
Thein SL 2000 Identification of factors regulating HbF production: a genetic approach. Blood Cell Molec Dis 5: 505
Cao A, Galanello R, Rosatelli MC 1994 Genotype-phenotype correlations in beta-thalassemias. Blood Rev 8: 1–12
Berg PE, Mittelman M, Elion J, Labie D, Schechter AN 1991 Increased protein binding to a −530 mutation of the human beta-globin gene associated with decreased beta-globin synthesis. Am J Hematol 36: 42–47
Elion J, Berg PE, Lapoumeroulie C, Trabuchet G, Mittelman M, Krishnamoorthy R, Schechter AN, Labie D 1992 DNA sequence variation in a negative control region 5′ to the beta-globin gene correlates with the phenotypic expression of the beta s mutation. Blood 79: 787–92
Wong SC, Stoming TA, Efremov GD, Huisman TH 1989 High frequencies of a rearrangement (+ATA; −T) at −530 to the beta- globin gene in different populations indicate the absence of a correlation with a silent beta-thalassemia determinant. Hemoglobin 13: 1–5
Craig JE, Kelly SJ, Barnetson R, Thein SL 1992 Molecular characterization of a novel 10.3 kb deletion causing beta-thalassaemia with unusually high Hb A2. Br J Haematol 82: 735–744
Flavell RA, Kooter JM, De Boer E, Little PF, Williamson R 1978 Analysis of the beta-delta-globin gene loci in normal and Hb Lepore DNA: direct determination of gene linkage and intergene distance. Cell 15: 25–41
Gibbons RJ, Suthers GK, Wilkie AO, Buckle VJ, Higgs DR 1992 X-linked alpha-thalassemia/mental retardation (ATR-X) syndrome: localization to Xq12-q21.31 by X inactivation and linkage analysis. Am J Hum Genet 51: 1136–1149
Picketts DJ, Higgs DR, Bachoo S, Blake DJ, Quarrell OW, Gibbons RJ 1996 ATRX encodes a novel member of the SNF2 family of proteins: mutations point to a common mechanism underlying the ATR-X syndrome. Hum Mol Genet 5: 1899–1907
Gibbons RJ, McDowell TL, Raman S, O'Rourke DM, Garrick D, Ayyub H, Higgs DR 2000 Mutations in ATRX, encoding a SWI/SNF-like protein, cause diverse changes in the pattern of DNA methylation. Nat Genet 24: 368–371
Gibbons RJ, Picketts DJ, Villard L, Higgs DR 1995 Mutations in a putative global transcriptional regulator cause X-linked mental retardation with alpha-thalassemia (ATR-X syndrome). Cell 80: 837–845
Viprakasit V, Gibbons RJ, Broughton BC, Tolmie JL, Brown D, Lunt P, Winter RM, Marinoni S, Stefanini M, Brueton L, Lehmann AR, Higgs DR 2001 Mutations in the general transcription factor TFIIH result in beta-thalassaemia in individuals with trichothiodystrophy. Hum Mol Genet 10: 2797–802
Nichols KE, Crispino JD, Poncz M, White JG, Orkin SH, Maris JM, Weiss M J 2000 Familial dyserythropoietic anaemia and thrombocytopenia due to an inherited mutation in GATA1. Nat Genet 24: 266–270
Shivdasani RA, Fujiwara Y, McDevitt MA, Orkin SH 1997 A lineage-selective knockout establishes the critical role of transcription factor GATA-1 in megakaryocyte growth and platelet development. EMBO J 16: 3965–3973
Orkin S 2000 Modulation of GATA-factor activity by Fog cofactors. Blood Cell Molec Dis 5: 501
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This work was supported by grants from Assessorato Igiene e Sanità Regione Sardegna: L.R. n. 11 30/4/1990, anno 2000 and by Fondazione Italiana L. Giambrone per la guarigione della Talassemia.
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Cao, A., Moi, P. Regulation of the Globin Genes. Pediatr Res 51, 415–421 (2002). https://doi.org/10.1203/00006450-200204000-00003
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DOI: https://doi.org/10.1203/00006450-200204000-00003
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