Skip to main content

Synthetic Antibody Gene Libraries for In Vitro Affinity Maturation

  • Protocol
Antibody Engineering Protocols

Part of the book series: Methods In Molecular Medicine™ ((MIMB,volume 51))

  • 960 Accesses

  • 1 Citation

Abstract

The application of phage display to the screening of antibody V-gene libraries promises to replace animal immunization and hybridoma technology as a means of antibody generation (1,2). Synthetic libraries offer the potential for expanding the immune system repertoire and designing libraries for particular sets of antigens. We have developed a method for the generation of synthetic antibody gene libraries by which spiked oligonucleotides are assembled by a ligase chain reaction protocol (3). This is a synthetic adaptation of a reaction that was previously used as a diagnostic tool (4,5).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Institutional subscriptions

Similar content being viewed by others

References

  1. Marks, J. D., Hoogenboom, H. R., Bonnert, T. P., McCafferty, J., Griffiths, A. D., and Winter, G. (1991) By-passing immunization: human antibodies from V-gene libraries displayed on phage. J. Mol. Biol. 222, 581–597.

    Article  PubMed  CAS  Google Scholar 

  2. Griffiths, A. D., Malmqvist, M., Marks, J. D., Bye, J. M., Embleton, M. J., McCafferty, J., Baier, M., Holliger, K. P., Gorick, B. D., Hughes-Jones, N. C., Hoogenboom, H. R., and Winter, G. (1993) Human anti-self antibodies with high specificity from phage display libraries. EMBO J. 12, 725–734.

    PubMed  CAS  Google Scholar 

  3. Deng, S.-J., MacKenzie, C. R., and Narang, S. A. (1993) Simultaneous randomization of antibody CDRs by a synthetic ligase chain reaction strategy. Nucleic Acids Res. 21, 4418–4419

    Article  PubMed  CAS  Google Scholar 

  4. Landegren, U., Kaiser, R., Sanders, J., and Hood, L. (1988) A ligase-mediated gene detection technique. Science 241, 1077–1080.

    Article  PubMed  CAS  Google Scholar 

  5. Barany, F. (1991) Genetic disease detection and DNA amplification using cloned thermostable ligase. Proc. Natl. Acad. Sci. USA 88, 189–193.

    Article  PubMed  CAS  Google Scholar 

  6. Bundle, D. R., Eichler, E., Gidney, M. A. J., Meldal, M., Ragauskas, A., Sigurskjold, B. W., Sinnott, B., Watson, D. C., Yaguchi, M., and Young, N. M. (1994) Molecular recognition of a Salmonella trisaccharide epitope by monoclonal antibody Se155-4. Biochemistry 33, 5172–5182.

    Article  PubMed  CAS  Google Scholar 

  7. Cygler, M., Rose, D. R., and Bundle, D. R. (1991) Recognition of a cell-surface oligosaccharide of pathogenic Salmonella by an antibody fragment Science 253, 442–445.

    Article  PubMed  CAS  Google Scholar 

  8. Anand, N. N., Mandal, S., MacKenzie, C. R., Sadowska, J., Sigurskjold, B., Young, N. M., Bundle, D. R., and Narang, S. A. (1991) Bacterial expression and secretion of various single-chain Fv genes encoding proteins specific for a Salmonella sero-type B O-antigen. J. Biol. Chem. 266, 21,874–21,879

    PubMed  CAS  Google Scholar 

  9. Brummell, D. A., Sharma, V. P., Anand, N. N., Bilous, D., Dubuc, G., Michniewicz, J., MacKenzie, C. R., Sadowska, J., Sigurskjold, B. W., Sinnott, B., Young, N. M., Bundle, D. R., and Narang, S. A. (1993) Probing the combining site of an anti-carbohydrate antibody by saturation-mutagenesis: role of the heavy-chain CDR3 residues. Biochemistry 32, 1180–1187.

    Article  PubMed  CAS  Google Scholar 

  10. Deng, S.-J., MacKenzie, C. R., Sadowska, J., Michniewicz, J., Young, N. M., Bundle, D. R., and Narang, S. A. (1994) Selection of antibody single-chain variable fragments with improved carbohydrate-binding by phage display. J. Biol. Chem. 269, 9533–9538.

    PubMed  CAS  Google Scholar 

  11. Schlom, J., Eggensperger, D., Colcher, D., Molinolo, A., Houchens, D., Miller, L. S., Hinkle, G., and Siler, K. (1992) Cancer Res. 53, 1067–1072.

    Google Scholar 

  12. Berek, C. and Milstein, C. (1987) Mutation drift and repertoire shift in the maturation of the immune response. Immunol. Rev. 96, 23–41.

    Article  PubMed  CAS  Google Scholar 

  13. Hutchison, C. A., Nordeen, S. K., Vogt, K., and Edgell, M. H. (1986) A complete library of point substitution mutants in the glucocorticoid response element of mouse mammary tumor virus. Proc. Natl. Acad. Sci. USA 83, 710–714.

    Article  PubMed  CAS  Google Scholar 

  14. Cwirla, S. E., Peters, E. H., Barrett, R. W., and Dower, W. S. (1990) Peptides on phage: a vast library of peptides for identifying ligands. Proc. Natl. Acad. Sci. USA 87, 6378–6382.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1995 Humana Press Inc.

About this protocol

Cite this protocol

Deng, Sj., MacKenzie, C.R., Narang, S.A. (1995). Synthetic Antibody Gene Libraries for In Vitro Affinity Maturation. In: Paul, S. (eds) Antibody Engineering Protocols. Methods In Molecular Medicine™, vol 51. Humana Press. https://doi.org/10.1385/0-89603-275-2:329

Download citation

  • DOI: https://doi.org/10.1385/0-89603-275-2:329

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-275-0

  • Online ISBN: 978-1-59259-538-9

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics