Gene‒environment interaction effect of hypothalamic‒pituitary‒adrenal axis gene polymorphisms and job stress on the risk of sleep disturbances

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Brain, Cognition and Mental Health

Main article text

 

Introduction

Materials and Methods

Subjects

Job stress

Sleep disturbances

DNA extraction and genotyping

Confounding factors

Statistical analysis

Results

Demographic characteristics of the subjects

Correlation between job stress and sleep disturbances

Associations of nine SNPs in HPA axis-related genes with sleep disturbances

Effect of the gene–environment interaction on sleep disturbances

Discussion

Conclusions

Supplemental Information

The interaction model between 9 HPA genes SNPs on sleep disturbances.

A box represents an interaction combination, the darker the color of the box, the higher the risk of the combination. Bars represent the maximum likelihood estimation of case weights. In the same box, the left column is the positive score of the combination, and the right is the negative score; the higher the positive score, the higher the risk of the combination. In the present study, the dark gray box represents the high sleep disturbances risk factors, and the light gray represents the low sleep disturbances risk factors. The best gene-gene interaction model is shown in (Second row, second column), which suggests that the subjects with the FKBP5 rs9470080-CT and rs1360780-CT genotypes and the CRHR1 rs110402-AA genotype had the highest sleep disturbance risk.

DOI: 10.7717/peerj.17119/supp-1

Haplotype analysis of FKBP5 gene.

Loci chosen for hap-analysis: rs1360780, rs4713916, rs3777747, rs3800373, rs9296158, rs9470080. All alleles of the above SNPs were analyzed by haplotype, using the first allele of each SNP as the reference standard (results are shown in Table 4, e.g., OR (95% CI) = 1.00 for rs1360780-C allele), and alleles with a frequency of less than 0.03 in controls and cases were excluded. Global chi2 is 123.439682, while df = 10, P < 0.01. Loci chosen for hap-analysis: rs1360780, rs4713916, rs3777747, rs3800373, rs9296158, rs9470080.

DOI: 10.7717/peerj.17119/supp-2

Best gene-gene interaction models, as identified by GMDR.

Adjusted for gender, age, ethnicity, marital status, smoking status and alcohol status. The best interaction model was selected based on the balance test error of the 1/10 test sample, the accuracy of the cross-validation and P-value, suggest that rs1360780 ×rs947008 ×rs110402 is the best interaction model (Cross-Validation Consistency:10/10, P < 0.001). Statistically significant P value was denoted in bold.

DOI: 10.7717/peerj.17119/supp-3

Raw Data.

Scores for all questionnaires and for all genes. These data were used to analyze the interaction of genes and job stress on sleep disturbance.

DOI: 10.7717/peerj.17119/supp-4

STROBE checklist v4 cross-sectional.

DOI: 10.7717/peerj.17119/supp-6

Supplementary Primer Sequences.

DOI: 10.7717/peerj.17119/supp-8

Additional Information and Declarations

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Min Zhao performed the experiments, analyzed the data, authored or reviewed drafts of the article, and approved the final draft.

Yuxi Wang performed the experiments, analyzed the data, authored or reviewed drafts of the article, and approved the final draft.

Yidan Zeng performed the experiments, prepared figures and/or tables, and approved the final draft.

Huimin Huang performed the experiments, prepared figures and/or tables, and approved the final draft.

Tong Xu performed the experiments, prepared figures and/or tables, and approved the final draft.

Baoying Liu performed the experiments, prepared figures and/or tables, and approved the final draft.

Chuancheng Wu performed the experiments, prepared figures and/or tables, and approved the final draft.

Xiufeng Luo performed the experiments, prepared figures and/or tables, and approved the final draft.

Yu Jiang conceived and designed the experiments, authored or reviewed drafts of the article, project administration, and approved the final draft.

Human Ethics

The following information was supplied relating to ethical approvals (i.e., approving body and any reference numbers):

The study was conducted in accordance with the Declaration of Helsinki, and the protocol was approved by the institutional ethical committees of Fujian Medica University (No. 2019025).

Data Availability

The following information was supplied regarding data availability:

The raw measurements are available in the Supplemental File.

Funding

This study was supported by the Fujian Medical University’s Research Foundation for Talented Scholars (grant number XRCZX2018011) and the Fuzhou Science and Technology Project (grant number 2022-S-033). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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