Implementation of 3D spatial indexing and compression in a large-scale molecular dynamics simulation database for rapid atomic contact detection [PDF]
, 2011 Background Molecular dynamics (MD) simulations offer the ability to observe the dynamics and interactions of both whole macromolecules and individual atoms as a function of time.
Rudesh D Toofanny +3 more
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Gel-based proteomic map of Arabidopsis thaliana root plastids and mitochondria [PDF]
, 2022 Background Non-photosynthetic plastids of plants are known to be involved in a range of metabolic and biosynthetic reactions, even if they have been difficult to study due to their small size and lack of color.
Aro Eva-Mari +4 more
core +1 more source
Revisiting the non-coding nature of pospiviroids [PDF]
, 2022 : Viroids are small, circular, highly structured pathogens that infect a broad range of plants, causing economic losses. Since their discovery in the 1970s, they have been considered as non-coding pathogens.
Adkar Purushothama, Charith Raj +1 more
core +5 more sources
Comparative transcriptomic analysis and functional characterization reveals that the class III peroxidase gene TaPRX-2A regulates drought stress tolerance in transgenic wheat [PDF]
, 2023 Drought is a major abiotic stress that reduces crop yields and quality worldwide. Although some genes involved in the response to drought stress have been identified, a more in-depth understanding of the mechanisms underlying wheat tolerance to drought ...
Chao Sui +7 more
core +1 more source
Genome diversity in the genera Fructobacillus, Leuconostoc and Weissella determined by physical and genetic mapping [PDF]
, 2010 Pulsed-field gel electrophoresis analysis of chromosomal single and double restriction profiles of 17 strains belonging to three genera of ‘Leuconostocaceae’ was done, resulting in physical and genetic maps for three Fructobacillus, six Leuconostoc and
Chelo, Ivo M. +2 more
core +1 more source
Mechanism study of alachlor biodegradation by Paecilomycesmarquandii with proteomic and metabolomic methods [PDF]
, 2015 Alachlor is an herbicide that is widely used worldwide to protect plant crops against broadleaf weedsand annual grasses. However, due to its endocrine-disrupting activity, its application had been bannedin the European Union.
Adrian Soboń +42 more
core +1 more source
Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers [PDF]
, 2013 Background Trypanosomatids of the genera Angomonas and Strigomonas live in a mutualistic association characterized by extensive metabolic cooperation with obligate endosymbiotic Betaproteobacteria.
Alves, João M.P. +10 more
core +5 more sources
Differential gene expression in an elite hybrid rice cultivar (Oryza sativa, L) and its parental lines based on SAGE data [PDF]
, 2007 Background It was proposed that differentially-expressed genes, aside from genetic variations affecting protein processing and functioning, between hybrid and its parents provide essential candidates for studying heterosis or hybrid vigor.
Shuhui Song +4 more
core +1 more source
Plant Biotechnology Journal, Volume 17, Issue 7, Page 1261-1275, July 2019., 2019 Summary Reliably generating rice varieties with low glycaemic index (GI) is an important nutritional intervention given the high rates of Type II diabetes incidences in Asia where rice is staple diet. We integrated a genome‐wide association study (GWAS) with a transcriptome‐wide association study (TWAS) to determine the genetic basis of the GI in rice.
Roslen Anacleto +12 more
wiley +1 more source
Class IIa bacteriocin resistance in V583: The mannose PTS operon mediates global transcriptional responses [PDF]
, 2010 Background The class IIa bacteriocin, pediocin PA-1, has clear potential as food preservative and in the medical field to be used against Gram negative pathogen species as Enterococcus faecalis and Listeria monocytogenes.
Opsata Mona, Nes Ingolf F, Holo Helge
core +2 more sources