Results 1 to 10 of about 54 (54)
Computational and Mathematical Biophysics, 2022 The venerable process of cellular respiration is essential for cells to produce energy from glucose molecules, in order to carry out cellular work. The process is responsible for producing molecules of ATP, a molecule which is thermodynamically coupled ...
Chaturvedi Archit
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Improving RNA secondary structure prediction via state inference with deep recurrent neural networks
Computational and Mathematical Biophysics, 2020 The problem of determining which nucleotides of an RNA sequence are paired or unpaired in the secondary structure of an RNA, which we call RNA state inference, can be studied by different machine learning techniques.
Willmott Devin +2 more
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Modeling repulsive forces on fibres via knot energies
Computational and Mathematical Biophysics, 2014 Modeling of repulsive forces is essential to the understanding of certain bio-physical processes, especially for the motion of DNA molecules. These kinds of phenomena seem to be driven by some sort of “energy” which especially prevents the molecules from
Blatt Simon, Reiter Philipp
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CBSF: A New Empirical Scoring Function for Docking Parameterized by Weights of Neural Network
Computational and Mathematical Biophysics, 2019 A new CBSF empirical scoring function for the estimation of binding energies between proteins and small molecules is proposed in this report. The final score is obtained as a sum of three energy terms calculated using descriptors based on a simple ...
Syrlybaeva Raulia R., Talipov Marat R.
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Thermal Response in Cellulose Iβ Based on Molecular Dynamics
Computational and Mathematical Biophysics, 2019 The structural details of cellulose I β were discussed according to molecular dynamics simulations with the GLYCAM-06 force field. The simulation outcomes were in agreement with previous experimental data, including structural parameters and hydrogen ...
Jiang Xuewei +3 more
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Computational and Mathematical BiophysicsVariational implicit solvation models (VISMs) have gained extensive popularity in the molecular-level solvation analysis of biological systems due to their cost-effectiveness and satisfactory accuracy.
Shao Yuanzhen, Chen Zhan, Zhao Shan
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A Study of Computational Genome Assembly by Graph Theory
Annals of the West University of Timisoara: Mathematics and Computer ScienceThe assembly of billions of short sequencing reads into a contiguous genome is a daunting task. The foundation knowledge of current DNA assembly models is concentrated among a select group, where the solution to the genome assembly challenge lies in ...
Sarkar Bijan
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Analysis of dim-light responses in rod and cone photoreceptors with altered calcium kinetics. [PDF]
J Math Biol, 2023 Abtout A, Reingruber J.
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A mathematical model of p62-ubiquitin aggregates in autophagy. [PDF]
J Math Biol, 2021 Delacour J +4 more
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Application of transport-based metric for continuous interpolation between cryo-EM density maps. [PDF]
AIMS Math, 2022 Ecoffet A +4 more
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