Results 11 to 20 of about 83 (83)

Modeling and analysis of ensemble average solvation energy and solute–solvent interfacial fluctuations

Computational and Mathematical Biophysics
Variational implicit solvation models (VISMs) have gained extensive popularity in the molecular-level solvation analysis of biological systems due to their cost-effectiveness and satisfactory accuracy.
Shao Yuanzhen, Chen Zhan, Zhao Shan
doaj   +1 more source

A Study of Computational Genome Assembly by Graph Theory

Annals of the West University of Timisoara: Mathematics and Computer Science
The assembly of billions of short sequencing reads into a contiguous genome is a daunting task. The foundation knowledge of current DNA assembly models is concentrated among a select group, where the solution to the genome assembly challenge lies in ...
Sarkar Bijan
doaj   +1 more source

Using game theory to detect genes involved in Autism Spectrum Disorder

Cooperative games, Gene expression, Microarrays, 91A12, 91A80, 92B15, 92C40,
Francisco Esteban, Dennis Wall
core   +1 more source

A practical guide to stochastic simulations of reaction-diffusion processes, available as http://arxiv.org/abs/0704.1908

, 2007
. A practical introduction to stochastic modelling of reaction-diffusion processes is presented. No prior knowledge of stochastic simulations is assumed. The methods are explained using illustrative examples.
Radek Erban, S. Jonathan Chapman, Philip, K. Maini   +3 more
core  

Combinatorics Of RNA Secondary Structures

, 1996
Secondary structures of polynucleotides can be view as a certain class of planar vertex-labeled graphs. We construct recursion formulae enumerating various sub-classes of these graphs as well as certain structural elements (sub-graphs).
Ivo L. Hofacker, Peter Schuster, Peter F. Stadler   +2 more
core  

Isotropic Effective Energy Simulated Annealing Searches for Low Energy Molecular Cluster States

, 1992
. The search for low energy states of molecular clusters is associated with the study of molecular conformation and especially protein folding. This paper describes a new global minimization algorithm which is effective and efficient for finding low ...
Thomas Coleman, Shalloway, David, Zhijun Wu, Wu, Zhijun, David Shalloway, Coleman, Thomas F.   +5 more
core  

Analysis of dim-light responses in rod and cone photoreceptors with altered calcium kinetics. [PDF]

J Math Biol, 2023
Abtout A, Reingruber J.
europepmc   +1 more source

A mathematical model of p62-ubiquitin aggregates in autophagy. [PDF]

J Math Biol, 2021
Delacour J, Doumic M, Martens S, Schmeiser C, Zaffagnini G.   +4 more
europepmc   +1 more source

Application of transport-based metric for continuous interpolation between cryo-EM density maps. [PDF]

AIMS Math, 2022
Ecoffet A, Woollard G, Kushner A, Poitevin F, Duc KD.   +4 more
europepmc   +1 more source

New Chemicals Suppressing SARS-CoV-2 Replication in Cell Culture. [PDF]

Molecules, 2022
Sulimov A, Ilin I, Kutov D, Shikhaliev K, Shcherbakov D, Pyankov O, Stolpovskaya N, Medvedeva S, Sulimov V.   +8 more
europepmc   +1 more source