Results 1 to 10 of about 83 (83)
Computational and Mathematical Biophysics, 2022 The venerable process of cellular respiration is essential for cells to produce energy from glucose molecules, in order to carry out cellular work. The process is responsible for producing molecules of ATP, a molecule which is thermodynamically coupled ...
Chaturvedi Archit
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Micromechanics of single supercoiled dna molecules [PDF]
, 2009 . The theory of the mechanical response of single DNA molecules un-der stretching and twisting stresses is reviewed. Using established results for the the semiflexible polymer including the effect of torsional stress, and for the free energy of ...
John F. Marko
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Improving RNA secondary structure prediction via state inference with deep recurrent neural networks
Computational and Mathematical Biophysics, 2020 The problem of determining which nucleotides of an RNA sequence are paired or unpaired in the secondary structure of an RNA, which we call RNA state inference, can be studied by different machine learning techniques.
Willmott Devin +2 more
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Modeling repulsive forces on fibres via knot energies
Computational and Mathematical Biophysics, 2014 Modeling of repulsive forces is essential to the understanding of certain bio-physical processes, especially for the motion of DNA molecules. These kinds of phenomena seem to be driven by some sort of “energy” which especially prevents the molecules from
Blatt Simon, Reiter Philipp
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CBSF: A New Empirical Scoring Function for Docking Parameterized by Weights of Neural Network
Computational and Mathematical Biophysics, 2019 A new CBSF empirical scoring function for the estimation of binding energies between proteins and small molecules is proposed in this report. The final score is obtained as a sum of three energy terms calculated using descriptors based on a simple ...
Syrlybaeva Raulia R., Talipov Marat R.
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A 3D Reaction-Diffusion System Describing Bidomain Calcium Dynamics in Cardiac Cell [PDF]
, 2019 International audienceWe are interested in modeling the interaction of calcium dynamics in a medium including sarcolemma and sarcoplasmic reticulum. The governing equations consist of a nonlinear reaction-diffusion system representing the various calcium
Karami, Fahd +5 more
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Thermal Response in Cellulose Iβ Based on Molecular Dynamics
Computational and Mathematical Biophysics, 2019 The structural details of cellulose I β were discussed according to molecular dynamics simulations with the GLYCAM-06 force field. The simulation outcomes were in agreement with previous experimental data, including structural parameters and hydrogen ...
Jiang Xuewei +3 more
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The class of microarray games and the relevance index for genes
, 2007 Coalitional game, Shapley value, Power index, Gene expression, Microarray, 91A12, 91A80, 92B15, 92C40,
Stefano Moretti +5 more
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On The Numerical Solution of the General “Ligand–Gated Neuroreceptors Model” via CAS MATHEMATICA [PDF]
, 2016 [Kyurkchiev Nikolay; Кюркчиев Николай]We present a software module for analysis of the general “ligand–gated neuroreceptors model” (GLGNM) within the programming environment of CAS Mathematica. Numerical examples which demonstrate scientific applications
Kyurkchiev, Nikolay
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Critical lack of equilibrium in stochastic kinetic proofreading
European Journal of Applied MathematicsIn this paper, we study the relation between the property of detailed balance and the ability of discriminating between different ligands for a class of stochastic models of kinetic proofreading.
Eugenia Franco, Juan J. L. Velázquez
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