Results 121 to 130 of about 18,990 (308)
On Common Intervals with Errors [PDF]
, 2006 Chauve C, Diekmann Y, Heber S, Mixtacki J, Rahmann S, Stoye J. On Common Intervals with Errors. Forschungsberichte. Bielefeld: Technische Fakultät der Universität Bielefeld; 2006.The information that groups of genes co-occur in several genomes provides a
Chauve, Cedric +5 more
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Efficient implementation of lazy suffix trees [PDF]
, 2003 Giegerich R, Kurtz S, Stoye J. Efficient implementation of lazy suffix trees. SOFTWARE-PRACTICE & EXPERIENCE. 2003;33(11):1035-1049.We present an efficient implementation of a write-only top-down construction for suffix trees.
Stoye, Jens ; https://orcid.org/ +2 more
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Efficient motif finding algorithms for large-alphabet inputs
BMC Bioinformatics, 2010 Background We consider the problem of identifying motifs, recurring or conserved patterns, in the biological sequence data sets. To solve this task, we present a new deterministic algorithm for finding patterns that are embedded as exact or inexact ...
Pavlovic Vladimir, Kuksa Pavel P
doaj +1 more source
Experiments with a fast string searching algorithm
Information Processing Letters, 1983 <p>Consider the problem of finding the first occurrence of a particular pattern in a (long) string of characters. Boyer and Moore found a fast algorithm for doing this. Here we consider how this algorithm behaves when executed on a multiprocessor.</p><p>It is shown that a simple implementation performs very well.
Peter Møller-Nielsen +1 more
openaire +2 more sources
Advanced Science, EarlyView.SMAD4 is identified as a guardian of 3D genome architecture in lung squamous cell carcinoma. Loss of SMAD4 unleashes EP300 at chromatin loop anchors, strengthening enhancer–promoter looping and H3K27ac at the SOX2 locus to drive aberrant SOX2 activation and tumor cell proliferation.
Qian Tang +33 more
wiley +1 more source
Engineering External Memory LCP Array Construction: Parallel, In-Place and Large Alphabet [PDF]
, 2017 The suffix array augmented with the LCP array is perhaps the most important data structure in modern string processing. There has been a lot of recent research activity on constructing these arrays in external memory.
Kärkkäinen, Juha, Kempa, Dominik
core +1 more source
Automated Extraction of Multicomponent Alloy Data Using Large Language Models for Sustainable Design
Advanced Science, EarlyView.A large language model (LLM) based pipeline is developed to automatically extract a comprehensive and accurate multicomponent alloy database from literature corpus. The extracted dataset is integrated with sustainability indicators to identify potential alloys that outperform existing industrial benchmark materials in terms of both performance and ...
Aravindan Kamatchi Sundaram +4 more
wiley +1 more source
Parameterized Strings: Algorithms and Data Structures [PDF]
, 2011 A parameterized string (p-string) T = T[1] T[2]...T[n] is a sophisticated string of length n composed of symbols from a constant alphabet Sigma and a parameter alphabet pi.
Beal, Richard A.
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PDIA6–SCD1 Axis Rewires Lipid Metabolism to Drive Gastric Cancer Progression
Advanced Science, EarlyView.Protein disulfide isomerase A6 (PDIA6) is identified as an oncogenic driver in gastric cancer. PDIA6 directly binds and stabilizes SCD1 by limiting its ubiquitin–proteasome‐mediated degradation, thereby sustaining monounsaturated fatty acid (MUFA)‐enriched lipid homeostasis and lipid metabolic reprogramming.
Zhen Tian +13 more
wiley +1 more source
SAMPI: protein identification with mass spectra alignments [PDF]
, 2007 Kaltenbach H-M, Wilke A, Böcker S. SAMPI: protein identification with mass spectra alignments. BMC Bioinformatics. 2007;8(1): 102.Background: Mass spectrometry based peptide mass fingerprints (PMFs) offer a fast, efficient, and robust method for protein ...
Sebastian Böcker +8 more
core +2 more sources