Results 81 to 90 of about 429,402 (391)
Amino-acid-dependent main-chain torsion-energy terms for protein systems
, 2012 Many commonly used force fields for protein systems such as AMBER, CHARMM, GROMACS, OPLS, and ECEPP have amino-acid-independent force-field parameters of main-chain torsion-energy terms.
Okamoto, Yuko, Sakae, Yoshitake
core +1 more source
Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born
Journal of Chemical Theory and Computation, 2012 We present an implementation of generalized Born implicit solvent all-atom classical molecular dynamics (MD) within the AMBER program package that runs entirely on CUDA enabled NVIDIA graphics processing units (GPUs).
A. Götz +5 more
semanticscholar +1 more source
Miocene Ethiopian amber: A new source of fossil cryptogams
Journal of Systematics and Evolution, 2021 Amber is renowned for the exceptional preservation state of its inclusions, allowing detailed morphological analysis and providing relevant environmental, palaeoecological, geographical, and geological information.
Valentine Bouju +8 more
semanticscholar +1 more source
Molecular Oncology, EarlyView.This study develops a semi‐supervised classifier integrating multi‐genomic data (1404 training/5893 validation samples) to improve homologous recombination deficiency (HRD) detection in breast cancer. Our method demonstrates prognostic value and predicts chemotherapy/PARP inhibitor sensitivity in HRD+ tumours.
Rong Zhu +12 more
wiley +1 more source
Single atom anisotropic magnetoresistance on a topological insulator surface
New Journal of Physics, 2015 We demonstrate single atom anisotropic magnetoresistance on the surface of a topological insulator, arising from the interplay between the helical spin–momentum-locked surface electronic structure and the hybridization of the magnetic adatom states.
Awadhesh Narayan +2 more
doaj +1 more source
Throwing our Voices: Ventriloquism as New Media Activism [PDF]
, 2018 In the fall of 2010, Chevron released an ad campaign designed to respond to consumer worries about the conduct of oil companies. Each ad depicted “customers” voicing rather nonspecific concerns about oil companies, answered by the “We Agree” slogan and ...
Day, Amber
core +2 more sources
Refinement of the AMBER Force Field for Nucleic Acids: Improving the Description of α/γ Conformers
, 2007 We present here the parmbsc0 force field, a refinement of the AMBER parm99 force field, where emphasis has been made on the correct representation of the a/g concerted rotation in nucleic acids (NAs).
Alberto Pérez +6 more
semanticscholar +1 more source
Molecular Oncology, EarlyView.The COMBAT classification system, developed through multi‐omics integration, stratifies adult patients with B‐cell acute lymphoblastic leukemia(B‐ALL) into three molecular subtypes with distinct surface antigen patterns, immune landscape, methylation patterns, biological pathways and prognosis.
Yang Song +11 more
wiley +1 more source
First result with AMBER+FINITO on the VLTI: The high-precision angular diameter of V3879 Sgr
, 2008 Our goal is to demonstrate the potential of the interferometric AMBER instrument linked with the Very Large Telescope Interferometer (VLTI) fringe-tracking facility FINITO to derive high-precision stellar diameters.
B. Bauvir +10 more
core +2 more sources
AMBER closure and differential phases: accuracy and calibration with a Beam Commutation [PDF]
, 2008 The first astrophysical results of the VLTI focal instrument AMBER have shown the importance of the differential and closure phase measures, which are supposed to be much less sensitive to atmospheric and instrumental biases than the absolute visibility.
Kraus, Stefan +3 more
core +5 more sources