Results 101 to 110 of about 1,276,957 (344)

Atomic: an open-source software platform for multi-level corpus annotation [PDF]

, 2014
This paper presents Atomic, an open-source platform-independent desktop application for multi-level corpus annotation. Atomic aims at providing the linguistic community with a user-friendly annotation tool and sustainable platform through its focus on ...
Bierkandt, Lennart, Druskat, Stephan, Gast, Volker, Rzymski, Christoph, Zipser, Florian   +4 more
core   +5 more sources

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

Bioinform., 2009
Summary: We have developed ClueGO, an easy to use Cytoscape plug-in that strongly improves biological interpretation of large lists of genes. ClueGO integrates Gene Ontology (GO) terms as well as KEGG/BioCarta pathways and creates a functionally ...
G. Bindea, B. Mlecnik, H. Hackl, P. Charoentong, M. Tosolini, A. Kirilovsky, W. Fridman, F. Pagès, Z. Trajanoski, J. Galon   +9 more
semanticscholar   +1 more source

The nicotinamide hypothesis revisited—plant defense signaling integrating PARP, nicotinamide, nicotinic acid, epigenetics, and glutathione

FEBS Letters, EarlyView.
Nicotinamide (NIC) and nicotinic acid (NIA) are proposed as stress signaling compounds in plants. Oxidative stress may lead to single strand breaks (SSB) in DNA, which activate poly(ADP‐ribose) polymerase (PARP). NIC and NIA are then formed from NAD. NIC and NIA can promote epigenetic changes leading to the expression of defense genes specific for the ...
Torkel Berglund, Anna B. Ohlsson
wiley   +1 more source

ANNOTATIONS [PDF]

British Journal of Ophthalmology, 1945
  +15 more sources

ANNOUNCEMENT-ANNOTATION TEXTS: DEFINITION, CORRELATION AND SYNTHESIS

Novìtnâ Osvìta, 2017
The paper deals with the problems of definition, correlation and synthesis of two text types: announcement and annotation. The main goal of this article is to postulate they have enough similar features to be combined in one text type.
Olga Dzykovych, Sandra J. Langer
doaj   +1 more source

Combination of DROOL rules and Protégé knowledge bases in the ONTO-H annotation tool [PDF]

, 2005
ONTO-H is a semi-automatic collaborative tool for the semantic annotation of documents, built as a Protégé 3.0 tab plug-in. Among its multiple functionalities aimed at easing the document annotation process, ONTO-H uses a rule-based system to create ...
Benjamins, R., Blázquez, Juan, Contreras, Jesús, Corcho, Oscar, Dodero, J.M., García-Silva, A., Millán, R, Navas, E., Niño, M., Rodríguez, J., Wert, C   +10 more
core   +1 more source

A framework for automatic semantic video annotation [PDF]

, 2013
The rapidly increasing quantity of publicly available videos has driven research into developing automatic tools for indexing, rating, searching and retrieval.
A Amir, A Basharat, A Gupta, A Kapoor, A Ulges, AF Smeaton, Amjad Altadmri, Amr Ahmed, B Chandrasekaran, C Fellbaum, DB Lenat, H Liu, H Motulsky, J Sivic, ML Shyu, N Haering, R Fergus, T Brox, WL Zhao, XY Wei, YG Jiang   +20 more
core   +1 more source

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

Nucleic Acids Research, 2007
The publication of a complete genome sequence is usually accompanied by annotations of its genes. In contrast to protein coding genes, genes for ribosomal RNA (rRNA) are often poorly or inconsistently annotated.
K. Lagesen, P. Hallin, E. Rødland, H. Stærfeldt, Torbjørn Rognes, D. Ussery   +5 more
semanticscholar   +1 more source

Single cis‐elements in brassinosteroid‐induced upregulated genes are insufficient to recruit both redox states of the BIL1/BZR1 DNA‐binding domain

FEBS Letters, EarlyView.
Phytohormone brassinosteroid‐induced gene regulation by the transcription factor BIL1/BZR1 involves redox‐dependent DNA‐binding alternation and interaction with the transcription factor PIF4. The reduced BIL1/BZR1 dimer binds preferred cis‐elements, while oxidation alters its oligomerization state and disrupts DNA‐binding ability.
Shohei Nosaki, Masae Ohtsuka, Takeshi Nakano, Masaru Tanokura, Takuya Miyakawa   +4 more
wiley   +1 more source

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.

Genes & Development, 2011
Large intergenic noncoding RNAs (lincRNAs) are emerging as key regulators of diverse cellular processes. Determining the function of individual lincRNAs remains a challenge.
M. Cabili, C. Trapnell, L. Goff, Magdalena J. Koziol, B. Tazón-Vega, A. Regev, J. Rinn   +6 more
semanticscholar   +1 more source