KIPEs3: Automatic annotation of biosynthesis pathways [PDF]
PLoS ONE, 2023 Flavonoids and carotenoids are pigments involved in stress mitigation and numerous other processes. Both pigment classes can contribute to flower and fruit coloration.
Andreas Rempel +2 more
doaj +4 more sources
Automatic Annotation of Narrative Radiology Reports [PDF]
Diagnostics, 2020 Narrative texts in electronic health records can be efficiently utilized for building decision support systems in the clinic, only if they are correctly interpreted automatically in accordance with a specified standard.
Ivan Krsnik +4 more
doaj +6 more sources
Automatic Image Annotation Based on Deep Learning Models: A Systematic Review and Future Challenges
IEEE Access, 2021 Recently, much attention has been given to image annotation due to the massive increase in image data volume. One of the image retrieval methods which guarantees the retrieval of images in the same way as texts are automatic image annotation (AIA ...
Myasar Mundher Adnan +5 more
doaj +4 more sources
Automatic Annotation of Change Detection Images [PDF]
Sensors, 2021 Earth observation satellites have been capturing a variety of data about our planet for several decades, making many environmental applications possible such as change detection.
Nathalie Neptune, Josiane Mothe
doaj +6 more sources
Automatic Annotation for Human Activity Recognition in Free Living Using a Smartphone [PDF]
Sensors, 2018 Data annotation is a time-consuming process posing major limitations to the development of Human Activity Recognition (HAR) systems. The availability of a large amount of labeled data is required for supervised Machine Learning (ML) approaches ...
Federico Cruciani +5 more
doaj +3 more sources
HiCAT: a tool for automatic annotation of centromere structure. [PDF]
Genome Biol, 2023 Significant improvements in long-read sequencing technologies have unlocked complex genomic areas, such as centromeres, in the genome and introduced the centromere annotation problem. Currently, centromeres are annotated in a semi-manual way.
Gao S +5 more
europepmc +2 more sources
OrbiFragsNets. A tool for automatic annotation of orbitrap MS2 spectra using networks grade as selection criteria [PDF]
MethodsX, 2023 We introduce OrbiFragsNets, a tool for automatic annotation of MS2 spectra generated by Orbitrap instruments, as well as the concepts of chemical consistency and fragments networks.
Edwin Chingate +3 more
doaj +2 more sources
scCATCH: Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data. [PDF]
iScience, 2020 Summary Recent advancements in single-cell RNA sequencing (scRNA-seq) have facilitated the classification of thousands of cells through transcriptome profiling, wherein accurate cell type identification is critical for mechanistic studies.
Shao X +5 more
europepmc +2 more sources
GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes. [PDF]
Genome ResLarge-scale genomic initiatives, such as the Earth BioGenome Project, require efficient methods for eukaryotic genome annotation. Here we present an automatic gene finder, GeneMark-ETP, integrating genomic-, transcriptomic-, and protein-derived evidence ...
Brůna T, Lomsadze A, Borodovsky M.
europepmc +2 more sources
UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase. [PDF]
Bioinformatics, 2020 Motivation The number of protein records in the UniProt Knowledgebase (UniProtKB: https://www.uniprot.org) continues to grow rapidly as a result of genome sequencing and the prediction of protein-coding genes.
MacDougall A +30 more
europepmc +2 more sources