Results 11 to 20 of about 160,303 (300)

Next-generation bacterial taxonomy [PDF]

Nature Reviews Microbiology, 2018
openaire   +4 more sources

Phylogenomic Analyses of the Genus Pseudomonas Lead to the Rearrangement of Several Species and the Definition of New Genera

Biology, 2021
Pseudomonas is a large and diverse genus broadly distributed in nature. Its species play relevant roles in the biology of earth and living beings. Because of its ubiquity, the number of new species is continuously increasing although its taxonomic ...
Zaki Saati-Santamaría, Ezequiel Peral-Aranega, Encarna Velázquez, Raúl Rivas, Paula García-Fraile   +4 more
doaj   +1 more source

Functional and Taxonomic Effects of Organic Amendments on the Restoration of Semiarid Quarry Soils

mSystems, 2021
The application of organic amendments to mining soils has been shown to be a successful method of restoration, improving key physicochemical soil properties.
Isabel Miralles, Raúl Ortega, André M. Comeau   +2 more
doaj   +1 more source

Bacterial nomenclature in the era of genomics

New Microbes and New Infections, 2021
The remarkable success of taxonomic discovery, powered by culturomics, genomics and metagenomics, creates a pressing need for new bacterial names while holding a mirror up to the slow pace of change in bacterial nomenclature. Here, I take a fresh look at
M.J. Pallen
doaj   +1 more source

Phenotypic, molecular characterization, antimicrobial susceptibility and draft genome sequence of Corynebacterium argentoratense strains isolated from clinical samples

New Microbes and New Infections, 2016
During a 12-year period we isolated five Corynebacterium argentoratense strains identified by phenotypic methods, including the use of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF) and 16S rRNA gene sequencing ...
I. Fernández-Natal, J.A. Sáez-Nieto, D. Rodríguez-Lázaro, S. Valdezate-Ramos, T. Parras-Padilla, M.J. Medina, R.H. Rodríguez-Pollán, J. Blom, A. Tauch, F. Soriano   +9 more
doaj   +1 more source

Taxogenomics of the Genus Cyclobacterium: Cyclobacterium xiamenense and Cyclobacterium halophilum as Synonyms and Description of Cyclobacterium plantarum sp. nov.

Microorganisms, 2020
The genus Cyclobacterium belongs to the phylum Bacteroidetes and includes eight species. Our study, based on the genomic parameters in silico DNA–DNA hybridization (GGDC), average nucleotide identity (OrthoANI), and average amino acid identity (AAI ...
Azadeh Shahinpei, Mohammad Ali Amoozegar, Leila Mirfeizi, Mahdi Moshtaghi Nikou, Antonio Ventosa, Cristina Sánchez-Porro   +5 more
doaj   +1 more source

How to Name and Classify Your Phage: An Informal Guide

Viruses, 2017
With this informal guide, we try to assist both new and experienced phage researchers through two important stages that follow phage discovery; that is, naming and classification.
Evelien Adriaenssens, J. Rodney Brister
doaj   +1 more source

Quantitative Real-Time PCR Assay for the Detection of Pectobacterium parmentieri, a Causal Agent of Potato Soft Rot

Plants, 2021
Pectobacterium parmentieri is a plant-pathogenic bacterium, recently attributed as a separate species, which infects potatoes, causing soft rot in tubers. The distribution of P.
Anna A. Lukianova, Peter V. Evseev, Alexander A. Stakheev, Irina B. Kotova, Sergey K. Zavriev, Alexander N. Ignatov, Konstantin A. Miroshnikov   +6 more
doaj   +1 more source

Microbial genomic taxonomy [PDF]

, 2013
A need for a genomic species definition is emerging from several independent studies worldwide. In this commentary paper, we discuss recent studies on the genomic taxonomy of diverse microbial groups and a unified species definition based on genomics ...
Chimetto, Luciane, Edwards, Robert A, Stackebrandt, Erko, Swings, Jean, Thompson, Cristiane C, Thompson, Fabiano L   +5 more
core   +3 more sources

Wolbachia and DNA barcoding insects: patterns, potential and problems [PDF]

, 2012
Wolbachia is a genus of bacterial endosymbionts that impacts the breeding systems of their hosts. Wolbachia can confuse the patterns of mitochondrial variation, including DNA barcodes, because it influences the pathways through which mitochondria are ...
BC Schmidt, BL Fisher, Brian L. Fisher, CC Nice, Claudia Bertrand, Cory Sheffield, D Steinke, DA Grasso, Da-Wei Huang, Daniel H. Janzen, DD Shoemaker, DH Janzen, Dirk Steinke, Donald Quicke, Eldon S. Eveleigh, ER Swartz, FM Jiggins, GDD Hurst, HR Braig, I Meusnier, J Engelstadter, J Fernandez Triana, J Fernandez Triana, J Ferrari, J Rozas, JA Russell, James Whitfield, Jan Hrcek, Jason Gibbs, Jonathan H. Badger, Jose Fernandez-Triana, Josephine Rodriguez, Julie K. Stahlhut, JWO Ballard, K Hilgenboecker, Kate Crosby, Katharine Hind, L Baldo, L Baldo, L Excoffier, LA Weinert, Laurence Packer, LL Chen, M Virgilio, M. Alex Smith, MA Smith, MA Smith, MA Smith, MA Smith, MA Smith, MA Smith, Mark R. Shaw, MC Linares, Mehrdad Hajibabaei, Milan Janda, Monty Wood, NV Ivanova, PDN Hebert, PDN Hebert, R Raychoudhury, R Raychoudhury, RA Johnstone, Rodolphe Rougerie, RS Rasmussen, S Ratnasingham, Scott E. Miller, SL Dobson, Sujeevan Ratnasingham, T Wenseleers, TL Whitworth, Winnie Hallwachs, X-J Sun, Xin Zhou, Yanwei Li, YW Li, Z Gompert   +75 more
core   +9 more sources