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Pattern Based Sequence Classification
IEEE Transactions on Knowledge and Data Engineering, 2016Sequence classification is an important task in data mining. We address the problem of sequence classification using rules composed of interesting patterns found in a dataset of labelled sequences and accompanying class labels. We measure the interestingness of a pattern in a given class of sequences by combining the cohesion and the support of the ...
Cheng Zhou, Boris Cule, Bart Goethals
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Itemset Based Sequence Classification
2013Sequence classification is an important task in data mining. We address the problem of sequence classification using rules composed of interesting itemsets found in a dataset of labelled sequences and accompanying class labels. We measure the interestingness of an itemset in a given class of sequences by combining the cohesion and the support of the ...
Cheng Zhou, Boris Cule, Bart Goethals
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Position-based sequence weights
Journal of Molecular Biology, 1994Sequence weighting methods have been used to reduce redundancy and emphasize diversity in multiple sequence alignment and searching applications. Each of these methods is based on a notion of distance between a sequence and an ancestral or generalized sequence.
S, Henikoff, J G, Henikoff
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Traffic index prediction based on sequence to sequence learning
Journal of Computational Methods in Sciences and Engineering, 2021The traffic index prediction plays an important role in many intelligent transportation applications. The challenge mainly comes from the strong nonlinearities in the changing of traffic index, which is caused by transitions of various traffic states including smooth traffic, congestion, breakdown and recovery.
Yueying Zhang, Zhijie Xu, Jianqin Zhang
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Skim-Based Genotyping by Sequencing
2014Genotyping by sequencing (GBS) is a relatively new method used to determine the differences in the genetic makeup of individuals. Its novelty stems from a combination of two already available methods: genotyping and next-generation sequencing. Depending on the individual study design GBS protocols can take multiple forms, however most share a sequence ...
Golicz, Agnieszka A. +2 more
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Filtering Bio-sequence Based on Sequence Descriptor
2006Study on biological sequence database similarity searching has received substantial attention in the past decade, especially after the sequencing of the human genome. As a result, with larger and larger increases in database sizes, fast similarity search is becoming an important issue.
Te-Wen Hsieh +2 more
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GafFour and sequence-based lighting
ACM SIGGRAPH 2018 Talks, 2018Sequence-based lighting has become increasingly popular to further improve efficiency at Imageworks as we are producing thousands of full CG shots each year. However, Katana slows down dramatically as the lighting setup becomes more complicated to accommodate the growing number of nodes which may make up the different shots.
Xinling Chen, Lucas Miller
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Sequencing-Based Typing of HLA
2007Human leukocyte antigen (HLA) typing is largely performed by use of PCR-based techniques in patients that require stem cell transplantation. In this chapter, HLA typing by sequencing-based typing techniques is described.
Berthold, Hoppe, Abdulgabar, Salama
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Data base for protein sequences
Proceedings of the June 7-10, 1976, national computer conference and exposition on - AFIPS '76, 1976Proteins are linear polymers synthesized in living organisms from twenty different kinds of amino acids according to the message carried in the chromosomes. Typically, they have evolved by natural selection over hundreds of millions of years through many small changes in sequence.
Margaret Oakley Dayhoff +4 more
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