Results 11 to 20 of about 35,511 (272)
Bayesian phylogenetics with BEAUti and the BEAST 1.7. [PDF]
Mol Biol Evol, 2012 Computational evolutionary biology, statistical phylogenetics and coalescent-based population genetics are becoming increasingly central to the analysis and understanding of molecular sequence data. We present the Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package version 1.7, which implements a family of Markov chain Monte Carlo
Drummond AJ +3 more
europepmc +7 more sources
Choosing among partition models in Bayesian phylogenetics. [PDF]
Mol Biol Evol, 2011 Bayesian phylogenetic analyses often depend on Bayes factors (BFs) to determine the optimal way to partition the data. The marginal likelihoods used to compute BFs, in turn, are most commonly estimated using the harmonic mean (HM) method, which has been shown to be inaccurate.
Fan Y, Wu R, Chen MH, Kuo L, Lewis PO.
europepmc +4 more sources
The complete mitochondrial genome of Rasbora atridorsalis (cypriniformes, Danionidae, Rasborinae) [PDF]
Mitochondrial DNA. Part B. ResourcesThe complete mitochondrial genome of Rasbora atridorsalis Kottelat and Chu (Spixiana. 10(3):313–318) is first characterized herein (GenBank accession: OM617726.1).
Li Jia Yue, Xiao Jiang Chen
doaj +2 more sources
Correction: Long-Branch Attraction Bias and Inconsistency in Bayesian Phylogenetics
PLoS ONE, 2010 Bryan Kolaczkowski, Joseph W. Thornton
doaj +12 more sources
Can Bayesian phylogeography reconstruct migrations and expansions in linguistic evolution? [PDF]
Royal Society Open Science, 2021 Bayesian phylogeography has been used in historical linguistics to reconstruct homelands and expansions of language families, but the reliability of these reconstructions has remained unclear.
Nico Neureiter +4 more
doaj +1 more source
A troglobitic species of the centipede Cryptops (Chilopoda, Scolopendromorpha) from northwestern Botswana [PDF]
ZooKeys, 2020 A new species of Cryptops, C. (Cryptops) legagus sp. nov., occurs in caves in the Koanaka and Gcwihaba Hills in northwestern Botswana. Bayesian molecular phylogenetics using 18S rRNA, 28S rRNA, 16S rRNA and cytochrome c oxidase subunit I corroborates a ...
Gregory D. Edgecombe +3 more
doaj +3 more sources
The use of statistical phylogenetics in virology
Инфекция и иммунитет, 2021 Molecular phylogenetics, particularly statistical phylogenetics, is widely used to solve the fundamental and applied problems in virology. Bayesian, or statistical, phylogenetic methods, which came into practice 10—15 years ago, markedly expanded the ...
Yu. A. Vakulenko +2 more
doaj +1 more source
Adaptive Metropolis-coupled MCMC for BEAST 2 [PDF]
PeerJ, 2020 With ever more complex models used to study evolutionary patterns, approaches that facilitate efficient inference under such models are needed. Metropolis-coupled Markov chain Monte Carlo (MCMC) has long been used to speed up phylogenetic analyses and to
Nicola F. Müller, Remco R. Bouckaert
doaj +2 more sources
Polytomies and Bayesian Phylogenetic Inference [PDF]
Systematic Biology, 2005 Bayesian phylogenetic analyses are now very popular in systematics and molecular evolution because they allow the use of much more realistic models than currently possible with maximum likelihood methods. There are, however, a growing number of examples in which large Bayesian posterior clade probabilities are associated with very short branch lengths ...
Lewis, Paul O +2 more
openaire +3 more sources
Estimating Bayesian Phylogenetic Information Content [PDF]
Systematic Biology, 2016 Measuring the phylogenetic information content of data has a long history in systematics. Here we explore a Bayesian approach to information content estimation. The entropy of the posterior distribution compared with the entropy of the prior distribution provides a natural way to measure information content.
Lewis, Paul O. +7 more
openaire +2 more sources