Results 31 to 40 of about 6,498 (242)

Integrating the biodiversity genomics continuum: harmonising data from barcodes to reference genomes [PDF]

Research Ideas and Outcomes
Biodiversity genomics is converging from historically separate approaches — DNA barcoding and reference genome sequencing — into an integrated digital ecosystem driven by shared data stewardship principles: transparent provenance, persistent identifiers ...
Katharina Heil, Tyler Alioto, Astrid Böhne, Tom Brown, Eli Chadwick, Physilia Chua, Christian de Guttry, Diego De Panis, Carole Goble, Ivo Gut, Marta Gut, Nick Juty, Seanna McTaggart, Laura Najera-Cortazar, Joana Paupério, Tomasz Rewicz, Felix Shaw, Stian Soiland-Reyes, Robert Waterhouse, Peter Woollard, Rutger Vos   +20 more
doaj   +3 more sources

Empowering national capacity for DNA-based approach to species identification and biodiversity monitoring [PDF]

Metabarcoding and Metagenomics
DNA barcoding has become a cornerstone for species identification and biodiversity monitoring, enabling applications from ecological research to conservation and environmental policy. The International Barcode of Life (iBOL) provides global coordination,
Elisavet Kaitetzidou, Piotr Gadawski, William P. Goodall-Copestake, Gabriela Dankova, Konstantinos Gkagkavouzis, Sylwia Holak, Tomasz Rewicz, Karolina Bącela-Spychalska, Tomasz Mamos, Kasia Fantoni, Aleksandra Jabłońska, Grzegorz Tończyk, Łukasz Trębicki, Filippos A. Aravanopoulos, Claudia Bruschini, Georgi Bonchev, Magda Bou Dagher Kharrat, Fedor Čiampor, Filipe O. Costa, Leonardo Dapporto, Torbjørn Ekrem, Sónia Ferreira, Matthias Geiger, Axel Hausmann, Paul D. N. Hebert, Belma Kalamujić Stroil, Stefaniya Kamenova, Ivona Kautmanova, Emre Keskin, Mladen Kučinić, Tatsiana Lipinskaya, Marko Mutanen, Spiros Papakostas, Ben Price, Rina Ramírez, Rodolphe Rougerie, Björn Rulik, Nikolaus Szucsich, Michelle Van Der Bank, Alexandros Triantafyllidis, Peter M. Hollingsworth, Michał Grabowski   +41 more
doaj   +3 more sources

Navigating the European aquatic eDNA landscape: Opportunities for metadata standardisation and data mobilisation [PDF]

Metabarcoding and Metagenomics
Environmental DNA (eDNA) has emerged as a transformative tool for monitoring aquatic biodiversity, offering a non-invasive and highly sensitive approach to detecting organisms across diverse ecosystems.
Ioannis Kavakiotis, Peter Woollard, Camila Babo, Elianne Egge, Dawid Krawczyk, Tiina Laamanen, Joana Paupério, Karolina Bacela-Spychalska, Nicolas Pade, Filipe O. Costa, Michal Grabowski, Veera Norros, Kristian Meissner, Spiros Papakostas   +13 more
doaj   +3 more sources

DNA barcode library of Portuguese water mites, with the descriptions of two new species (Acari, Hydrachnidia) [PDF]

ZooKeys
This study presents the first results from the analysis of water mites collected in Portugal as part of the Biodiversity Genomics Europe project. 307 COI DNA barcodes clustered into 75 BINs are provided, with 38 BINs being unique and deposited for the ...
Vladimir Pešić, Andrzej Zawal, Sónia Ferreira, Laura Benitez-Bosco, Ana Cruz-Oliveira, Dinis Girão, Adriana Padilha, Paolo Turaccio, Samantha Rossini, Lorenzo Ballini, Giorgia Staffoni, Sara Fratini, Claudio Ciofi, Alessio Iannucci, Torbjørn Ekrem, Elisabeth Stur   +15 more
doaj   +3 more sources

Towards Connecting Molecular Data and the Biodiversity Research Community: An ENA and ELIXIR biodiversity community perspective

, 2022
Global and regional efforts for generating molecular sequencing data are fundamental to characterise and monitor the Earth's biodiversity. However, exploiting the full potential of molecular data for biodiversity monitoring and conservation is still a ...
Cochrane,Guy, Gabald\uf3n, Toni, Guy Cochrane, Gabaldón, Toni, Cochrane, Guy, Waterhouse, Robert, Robert Waterhouse, Waterhouse,Robert, Paup\ue9rio, Joana, Lanfear, Jerry, Josephine Burgin, Burgin, Josephine, Pauperio,Joana, Joana Paupério, Lanfear,Jerry, Paupério, Joana, Gabaldón,Toni, Burgin,Josephine, Jerry Lanfear, Toni Gabaldón   +19 more
core   +1 more source

Disseminating “hidden” scientific collections: the medium and large-sized terrestrial mammals at the Museo di Anatomia Comparata “Giovanni Battista Grassi”, Roma, Italy [PDF]

Biodiversity Data Journal
The dissemination of specimen data in scientific collections is a crucial step in making them available to the scientific community. However, even today, especially in some countries, little or nothing is known about the contents of the naturalistic ...
Alexandra M. R. Bezerra, Edoardo Di Russo, Riccardo Castiglia   +2 more
doaj   +3 more sources

Mapping.bio: Piloting FAIR semantic mappings for biodiversity digital twins

, 2023
Biodiversity research has a strong focus on the links between environment and functional traits, e.g., to assess how anthropogenic drivers of change impact ecological systems (Díaz et al. 2013).
Wolodkin,Alexander, Alexander Wolodkin, Grieb,Jonas, Jonas Grieb, Claus Weiland, Weiland,Claus   +5 more
core   +1 more source

ERGA-BGE Chromosome-Level Genome of Patella rustica Linnaeus, 1758: a Resource to Investigate Responses to Global Warming in the intertidal [version 2; peer review: 2 approved, 1 approved with reservations]

Open Research Europe
The reference genome of Patella rustica Linnaeus, 1758 (Gastropoda, Patellidae) will offer a unique opportunity to understand how intertidal organisms respond to the effects of global warming, contributing to improve our predictions about the impact of ...
Jèssica Gómez-Garrido, Fernando Cruz, Fergal Martin, Leanne Haggerty, Tom Brown, Rebekah A Oomen, Anna Lazar, Thomas Marcussen, Rocío Nieto Vilela, Astrid Böhne, Rui Faria, Torsten H Struck, Marta Gut, Fernando P Lima, Laura Aguilera, Rita Monteiro, Francisco Câmara Ferreira, Tyler Alioto   +17 more
doaj   +1 more source

Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome [PDF]

, 2009
Background Although the Illumina 1 G Genome Analyzer generates billions of base pairs of sequence data, challenges arise in sequence selection due to the varying sequence quality.
Kerstens Hindrik HD, Heuven, H.C.M., Johan T den Dunnen, Henri CM Heuven, Andreia J Amaral, den Dunnen Johan T, Dibbits Bert, Groenen Martien AM, Heuven Henri CM, Megens, H.J.W.C., Amaral Andreia J, Megens Hendrik-Jan, Bert Dibbits, Martien AM Groenen, Groenen, M.A.M., Hendrik-Jan Megens, Dibbits, B.W., Dungen, J., den, Kerstens, H.H.D., Hindrik HD Kerstens, Richard PMA Crooijmans, Crooijmans, R.P.M.A., den Dungen, J., Crooijmans Richard PMA, Amaral, A.J.   +24 more
core   +1 more source

New techniques for old bones: Morphometric and diffeomorphometric analysis of the bony labyrinth of the Reilingen and Ehringsdorf Neandertals

The Anatomical Record, EarlyView.
Abstract Neandertals are known to possess very distinctive traits in their bony labyrinth morphology, such as an inferiorly positioned posterior canal and a very low number of turns in the cochlea. Hence, the inner ear has been often used to assess the Neandertal status of fragmentary fossils.
Alessandro Urciuoli, Julia Diez‐Valero, Ignacio Martínez, Rolf Quam, Brian A. Keeling, Nicole M. Webb, Mercedes Conde‐Valverde   +6 more
wiley   +1 more source