Results 1 to 10 of about 485,142 (315)
Genome assembly composition of the String “ACGT” array: a review of data structure accuracy and performance challenges [PDF]
PeerJ Computer Science, 2023 Background The development of sequencing technology increases the number of genomes being sequenced. However, obtaining a quality genome sequence remains a challenge in genome assembly by assembling a massive number of short strings (reads) with the ...
Sherif Magdy Mohamed Abdelaziz Barakat +4 more
doaj +2 more sources
Effects of GC bias in next-generation-sequencing data on de novo genome assembly. [PDF]
PLoS ONE, 2013 Next-generation-sequencing (NGS) has revolutionized the field of genome assembly because of its much higher data throughput and much lower cost compared with traditional Sanger sequencing. However, NGS poses new computational challenges to de novo genome
Yen-Chun Chen +4 more
doaj +1 more source
Wellcome Open Research, 2021 We present a genome assembly from an individual male Rattus norvegicus (the Norway rat; Chordata; Mammalia; Rodentia; Muridae). The genome sequence is 2.44 gigabases in span. The majority of the assembly is scaffolded into 20 chromosomal pseudomolecules,
Kerstin Howe +20 more
doaj +1 more source
Wellcome Open Research, 2022 We present a genome assembly from an individual female Vespula germanica (the German wasp; Arthropoda; Insecta; Hymenoptera; Vespidae). The genome sequence is 206 megabases in span.
Liam M. Crowley
doaj +1 more source
Rapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome. [PDF]
PLoS ONE, 2013 Next-generation sequencing (NGS) technologies have enabled high-throughput and low-cost generation of sequence data; however, de novo genome assembly remains a great challenge, particularly for large genomes.
Alex R Hastie +12 more
doaj +1 more source
Optical map guided genome assembly
BMC Bioinformatics, 2020 Background The long reads produced by third generation sequencing technologies have significantly boosted the results of genome assembly but still, genome-wide assemblies solely based on read data cannot be produced.
Miika Leinonen, Leena Salmela
doaj +1 more source
Comparing memory-efficient genome assemblers on stand-alone and cloud infrastructures. [PDF]
PLoS ONE, 2013 A fundamental problem in bioinformatics is genome assembly. Next-generation sequencing (NGS) technologies produce large volumes of fragmented genome reads, which require large amounts of memory to assemble the complete genome efficiently.
Dimitrios Kleftogiannis +2 more
doaj +1 more source
BMC Research Notes, 2023 Objective The tarnished plant bug (TPB), Lygus lineolaris (Palisot de Beauvois) (Hemiptera: Miridae), is a pest damaging many cultivated crops in North America.
O. P. Perera +10 more
doaj +1 more source
Data in Brief, 2022 Trichoderma asperellum PK1J2 is a promising cellulase-producing fungus isolated from a palm empty fruit bunch in Riau, Indonesia. Presented here is the genome assembly of T. asperellum PK1J2.
Fela Laila Nur Hidayati +4 more
doaj +1 more source
BMC Genomics, 2019 Background Mithun (Bos frontalis), also called gayal, is an endangered bovine species, under the tribe bovini with 2n = 58 XX chromosome complements and reared under the tropical rain forests region of India, China, Myanmar, Bhutan and Bangladesh ...
Sabyasachi Mukherjee +11 more
doaj +1 more source