Results 21 to 30 of about 4,666,723 (353)
Genome assembly of six polyploid potato genomes [PDF]
Scientific Data, 2020 AbstractGenome assembly of polyploid plant genomes is a laborious task as they contain more than two copies of the genome, are often highly heterozygous with a high level of repetitive DNA. Next Generation genome sequencing data representing one Chilean and five Peruvian polyploid potato (Solanum spp.) landrace genomes was used to construct genome ...
Maria Kyriakidou +4 more
openaire +3 more sources
TlaskalV/Unicycler-genome-assembly: zenodo release
, 2023 script which performs genome assembly of short ...
Vojtech Tlaskal
core +1 more source
B-assembler: a circular bacterial genome assembler
BMC Genomics, 2022 Abstract Background Accurate bacteria genome de novo assembly is fundamental to understand the evolution and pathogenesis of new bacteria species. The advent and popularity of Third-Generation Sequencing (TGS) enables assembly of bacteria genomes at an unprecedented speed. However, most current
Fengyuan Huang +7 more
openaire +3 more sources
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
Nature Methods, 2021 Haplotype-resolved de novo assembly is the ultimate solution to the study of sequence variations in a genome. However, existing algorithms either collapse heterozygous alleles into one consensus copy or fail to cleanly separate the haplotypes to produce ...
Hao-Yu Cheng +4 more
semanticscholar +1 more source
A complete telomere-to-telomere assembly of the maize genome
Nature Genetics, 2023 A complete telomere-to-telomere genome assembly of the maize Mo17 inbred line uncovers structural features of the highly complex maize genome. A complete telomere-to-telomere (T2T) finished genome has been the long pursuit of genomic research.
Jian Chen +15 more
semanticscholar +1 more source
Optical map guided genome assembly
BMC Bioinformatics, 2020 Background The long reads produced by third generation sequencing technologies have significantly boosted the results of genome assembly but still, genome-wide assemblies solely based on read data cannot be produced.
Miika Leinonen, Leena Salmela
doaj +1 more source
Plant Biotechnology Journal, 2023 Summary Brassica rapa comprises many important cultivated vegetables and oil crops. However, Chiifu v3.0, the current B. rapa reference genome, still contains hundreds of gaps. Here, we presented a near‐complete genome assembly of B.
Lei Zhang +5 more
semanticscholar +1 more source
BMC Genomics, 2019 Background Mithun (Bos frontalis), also called gayal, is an endangered bovine species, under the tribe bovini with 2n = 58 XX chromosome complements and reared under the tropical rain forests region of India, China, Myanmar, Bhutan and Bangladesh ...
Sabyasachi Mukherjee +11 more
doaj +1 more source
Rapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome. [PDF]
PLoS ONE, 2013 Next-generation sequencing (NGS) technologies have enabled high-throughput and low-cost generation of sequence data; however, de novo genome assembly remains a great challenge, particularly for large genomes.
Alex R Hastie +12 more
doaj +1 more source
PLoS ONE, 2014 Advances in modern sequencing technologies allow us to generate sufficient data to analyze hundreds of bacterial genomes from a single machine in a single day.
Bruce J. Walker +10 more
semanticscholar +1 more source