Results 41 to 50 of about 757,981 (296)

Leveraging multiple sequencing technologies to generate a haplotype specific assembly of sugarcane R570. [W1018] [PDF]

, 2020
While sugarcane is one of the world's most important economic grasses for its sugar production and biofuel potential, tools and resources to understand its genetics are lacking.
Aitken, Karen S., D'Hont, Angélique, Garsmeur, Olivier, Grimwood, Jane, Healey, Adam, Henry, Robert, Jenkins, Jerry, Lovell, John, Schmutz, Jeremy   +8 more
core  

Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes [PDF]

, 2015
The wheat stem rust fungus Puccinia graminis f. sp. tritici (Pgt) is one of the most destructive pathogens of wheat. In this study, a draft genome was built for a founder Australian Pgt isolate of pathotype (pt.) 21-0 (collected in 1954) by next ...
Cuomo, Christina A, Dodds, Peter N, Ellis, Jeffrey G, Garnica, Diana P, Karaoglu, Haydar, Mago, Rohit, Nemri, Adnane, Park, Robert F, Rathjen, John P, Sperschneider, Jana, Upadhyaya, Narayana M, Xu, Bo   +11 more
core   +2 more sources

Integrating genome assemblies with MAIA [PDF]

Bioinformatics, 2010
Abstract Motivation:  De novo assembly of a eukaryotic genome with next-generation sequencing data is still a challenging task. Over the past few years several assemblers have been developed, often suitable for one specific type of sequencing data.
Nijkamp, J.F. (author), Winterbach, W. (author), Van den Broek, M. (author), Daran, J.M. (author), Reinders, M.J.T. (author), De Ridder, D. (author)   +5 more
openaire   +4 more sources

GTasm: a genome assembly method using graph transformers and HiFi reads

Frontiers in Genetics
MotivationGenome assembly aims to reconstruct the whole chromosome-scale genome sequence. Obtaining accurate and complete chromosome-scale genome sequence serve as an indispensable foundation for downstream genomics analyses.
Junwei Luo, Ziheng Zhang, Xinliang Ma, Chaokun Yan, Huimin Luo   +4 more
doaj   +1 more source

Genome maps across 26 human populations reveal population-specific patterns of structural variation. [PDF]

, 2019
Large structural variants (SVs) in the human genome are difficult to detect and study by conventional sequencing technologies. With long-range genome analysis platforms, such as optical mapping, one can identify large SVs (>2 kb) across the genome in ...
Cao, Han, Chan, Ting-Fung, Chow, Eugene YC, Chu, Catherine, Chung, Claire YL, Hastie, Alex R, Jin, Nana, Kwok, Pui-Yan, Lam, Ernest T, Leung, Alden KY, Levy-Sakin, Michal, Li, Le, Lin, Chin, Ma, Walfred, McCaffrey, Jennifer, Mostovoy, Yulia, Naguib, Ahmed, Pastor, Steven, Poon, Annie, Rajagopalan, Ramakrishnan, Sibert, Justin, Wang, Wei-Ping, Wong, Karen HY, Xiao, Ming, Yip, Kevin Y, Young, Eleanor   +25 more
core   +2 more sources

GAM: Genomic Assemblies Merger

EMBnet.journal, 2012
Motivations. In the last 3 years more than 20 assemblers have been proposed to tackle the hard task of assembling. Recent evaluation efforts (Assemblathon 1 and GAGE) demonstrated that none of these tools clearly outperforms the others. However, results clearly show that some assemblers performs better than others on specific regions and statistics ...
A Policriti, S Scalabrin, F Vezzi, R Vicedomini   +3 more
openaire   +3 more sources

The genome sequence of the Common Brassy Ringlet, Erebia cassioides (Reiner & Hohenwarth, 1792) (Lepidoptera, Nymphalidae) [PDF]

Research Ideas and Outcomes
We present a chromosome-level genome assembly from a female specimen of the Common Brassy Ringlet Erebia cassioides (Arthropoda, Insecta, Lepidoptera, Nymphalidae).
Camille Cornet, Kay Lucek
doaj   +3 more sources

Improvement of the ayu (Plecoglossus altivelis) draft genome using Hi-C sequencing

BMC Research Notes, 2023
Objective The ayu or sweetfish Plecoglossus altivelis is ray-finned fish that is widely distributed in East Asia. The genome size of ayu was estimated at approximately 420 Mb.
Masatoshi Nakamoto, Takashi Sakamoto
doaj   +1 more source

TIGER: tiled iterative genome assembler [PDF]

BMC Bioinformatics, 2012
Abstract Background With the cost reduction of the next-generation sequencing (NGS) technologies, genomics has provided us with an unprecedented opportunity to understand fundamental questions in biology and elucidate human diseases.
Wu, Xiao-Long, Heo, Yun, El Hajj, Izzat, Hwu, Wen-Mei, Chen, Deming, Ma, Jian   +5 more
openaire   +2 more sources

Reciprocal control of viral infection and phosphoinositide dynamics

FEBS Letters, EarlyView.
Phosphoinositides, although scarce, regulate key cellular processes, including membrane dynamics and signaling. Viruses exploit these lipids to support their entry, replication, assembly, and egress. The central role of phosphoinositides in infection highlights phosphoinositide metabolism as a promising antiviral target.
Marie Déborah Bancilhon, Bruno Mesmin
wiley   +1 more source