Results 41 to 50 of about 4,666,723 (353)

Versatile genome assembly evaluation with QUAST-LG

Bioinform., 2018
Motivation The emergence of high‐throughput sequencing technologies revolutionized genomics in early 2000s. The next revolution came with the era of long‐read sequencing.
Alla Mikheenko, A. Prjibelski, V. Saveliev, D. Antipov, A. Gurevich   +4 more
semanticscholar   +1 more source

Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis

Nature Genetics, 2021
Tea is an important global beverage crop and is largely clonally propagated. Despite previous studies on the species, its genetic and evolutionary history deserves further research. Here, we present a haplotype-resolved assembly of an Oolong tea cultivar,
Xing-Tan Zhang, Shuai Chen, Long-Qing Shi, D. Gong, Shengcheng Zhang, Qian Zhao, D. Zhan, L. Vasseur, Yi-Bin Wang, Jia-Xin Yu, Zhen-Yang Liao, Xin-Dan Xu, Rui Qi, Wenling Wang, Yunran Ma, Pengjie Wang, Nai-Xing Ye, Dongna Ma, Yan Shi, Haifeng Wang, Xiao-Kai Ma, Xiang-Rui Kong, Jing-Xian Lin, Liufeng Wei, Ya-Ying Ma, Ruoyu Li, Gui-Ping Hu, Hai-Fang He, Lin Zhang, R. Ming, G. Wang, Hai-Bao Tang, M. You   +32 more
semanticscholar   +1 more source

Data Mining of the Coffee Rust Genome [PDF]

, 2012
The genomes of nine isolates of _Hemileia vastatrix_, the causal agent of coffee leaf rust were sequenced by Illumina and 454. Quality control, cleaning and _de novo_ assemblies of data were performed.
Silvia Restrepo, David Octavio Botero-Rozo, Alvaro Gaitan, Diego M. Riaño-Pachon, Marco Cristancho, William Giraldo   +5 more
core   +1 more source

Fast and accurate de novo genome assembly from long uncorrected reads

bioRxiv, 2016
The assembly of long reads from Pacific Biosciences and Oxford Nanopore Technologies typically requires resource intensive error correction and consensus generation steps to obtain high quality assemblies.
Robert Vaser, Ivan Sovic, N. Nagarajan, Mile Šikić   +3 more
semanticscholar   +1 more source

A high-quality genome assembly highlights rye genomic characteristics and agronomically important genes

Nature Genetics, 2021
Rye is a valuable food and forage crop, an important genetic resource for wheat and triticale improvement and an indispensable material for efficient comparative genomic studies in grasses.
Guang-Wei Li, Li-Jian Wang, Jian-Ping Yang, Hang He, Huai-Bing Jin, Xu-Ming Li, Tian-Heng Ren, Zheng-Long Ren, Feng Li, Xue Han, Xiaoge Zhao, Ling-Li Dong, Yi-Wen Li, Zhong-Ping Song, Ze-Hong Yan, Nannan Zheng, C. Shi, Zhao-Hui Wang, Shu-Lin Yang, Zi-Jun Xiong, Meng-Lan Zhang, Guanghua Sun, Xu Zheng, Ming-Yue Gou, Chang-Mian Ji, Jun-Kai Du, Hong-Kun Zheng, J. Doležel, Xing-Wang Deng, N. Stein, Qing-Hua Yang, Kun-Pu Zhang, Dao-Wen Wang   +32 more
semanticscholar   +1 more source

Sequential packaging of RNA genomic segments during the assembly of Bluetongue virus. [PDF]

, 2014
Bluetongue virus (BTV), a member of the Orbivirus genus within the Reoviridae family, has a genome of 10 double-stranded RNA segments, with three distinct size classes.
Roy, Polly, Sung, Po-Yu, Po-yu Sung, Polly Roy   +3 more
core   +1 more source

On the sequencing and assembly of the human genome [PDF]

Proceedings of the National Academy of Sciences, 2002
On June 26, 2000, Celera Genomics and the International Human Genome Sequencing Consortium (HGSC) announced at the White House the completion of the first assembly of the human genome and the completion of a rough draft, respectively. In February of 2001, the two teams simultaneously published their analyses of the genome sequences generated (1, 2 ...
Eugene W, Myers, Granger G, Sutton, Hamilton O, Smith, Mark D, Adams, J Craig, Venter   +4 more
openaire   +2 more sources

High-quality Arabidopsis thaliana Genome Assembly with Nanopore and HiFi Long Reads

bioRxiv, 2021
Arabidopsis thaliana is an important and long-established model species for plant molecular biology, genetics, epigenetics, and genomics. However, the latest version of reference genome still contains significant number of missing segments.
Bo Wang, Xiao-Fei Yang, Yanyan Jia, Yu Xu, Peng Jia, Ningxin Dang, Song-Bo Wang, Tun Xu, Xi-Xi Zhao, Sheng-Han Gao, Quanbin Dong, Kai Ye   +11 more
semanticscholar   +1 more source

BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison [PDF]

, 2004
Bartels D, Kespohl S, Albaum S, et al. BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics.
Kespohl, Sebastian, Drüke, Tanja, Albaum, Stefan ; https://orcid.org/, Bartels, Daniela, Kaiser, Olaf, Goesmann, Alexander ; https://orcid.org/, Pühler, Alfred ; https://orcid.org/, Schuster, Stephan C., Raddatz, Günter, Stoye, Jens ; https://orcid.org/, Herold, Julia, Pfeiffer, Friedhelm, Meyer, Folker, Günter Raddatz, Stephan C. Schuster, Daniela Bartels, Alexander Goesmann, Olaf Kaiser, Jens Stoye, Folker Meyer, Friedhelm Pfeiffer, Alfred Pühler, Julia Herold   +21 more
core   +1 more source

Quality data of whole-genome-sequence and assembly.

, 2020
Quality data of whole-genome-sequence and assembly.
Fumihiko Takeuchi (118220), Hisako Kyan (4922593), Akinori Yamano (8394009), Tatsunori Masatani (497109), Toshihiro Matsui (1917), Takaya Sakura (2016025), Mami Murakami (791941), Kisaburo Nagamune (180747), Ryuma Matsubara (813362), Junpei Fukumoto (8394006), Michiru Tahara (180743), Motomichi Matsuzaki (78878), Tomohide Matsuo (46062), Yasuhiro Takashima (188527)   +13 more
core   +1 more source