Results 31 to 40 of about 2,481,819 (312)

On the sequencing and assembly of the human genome [PDF]

Proceedings of the National Academy of Sciences, 2002
On June 26, 2000, Celera Genomics and the International Human Genome Sequencing Consortium (HGSC) announced at the White House the completion of the first assembly of the human genome and the completion of a rough draft, respectively. In February of 2001, the two teams simultaneously published their analyses of the genome sequences generated (1, 2 ...
Eugene W, Myers, Granger G, Sutton, Hamilton O, Smith, Mark D, Adams, J Craig, Venter   +4 more
openaire   +2 more sources

Integrating genome assemblies with MAIA [PDF]

Bioinformatics, 2010
Abstract Motivation:  De novo assembly of a eukaryotic genome with next-generation sequencing data is still a challenging task. Over the past few years several assemblers have been developed, often suitable for one specific type of sequencing data.
Jurgen F. Nijkamp, Wynand Winterbach, Marcel van den Broek, Jean-Marc Daran, Marcel J. T. Reinders, Dick de Ridder   +5 more
openaire   +4 more sources

PACVr: plastome assembly coverage visualization in R

BMC Bioinformatics, 2020
Background Plastid genomes typically display a circular, quadripartite structure with two inverted repeat regions, which challenges automatic assembly procedures.
Michael Gruenstaeudl, Nils Jenke
doaj   +1 more source

Targeted Assembly of Short Sequence Reads [PDF]

, 2011
As next-generation sequence (NGS) production continues to increase, analysis is becoming a significant bottleneck. However, in situations where information is required only for specific sequence variants, it is not necessary to assemble or align whole ...
Rene L. Warren, René L Warren, Robert A Holt, Warren René L., Rene Warren, Holt Robert A., Robert Holt, Robert A. Holt   +7 more
core   +2 more sources

Data Mining of the Coffee Rust Genome [PDF]

, 2012
The genomes of nine isolates of _Hemileia vastatrix_, the causal agent of coffee leaf rust were sequenced by Illumina and 454. Quality control, cleaning and _de novo_ assemblies of data were performed.
Silvia Restrepo, David Octavio Botero-Rozo, Alvaro Gaitan, Diego M. Riaño-Pachon, Marco Cristancho, William Giraldo   +5 more
core   +1 more source

A pseudomolecule assembly of the Rocky Mountain elk genome. [PDF]

, 2021
Rocky Mountain elk (Cervus canadensis) populations have significant economic implications to the cattle industry, as they are a major reservoir for Brucella abortus in the Greater Yellowstone area.
Olsen, Steven, David Alt, William Edwards, Darrell O Bayles, Rick E Masonbrink, Paola Boggiatto, Jeffrey Williams, Alt, David, Bayles, Darrell, Boggiatto, Paola, Aleksey Zimin, Steven Olsen, Tatum, Fred, Fred Tatum, Andrew Severin, Severin, Andrew, Jennifer Wilson-Welder, Wilson-Welder, Jennifer, Edwards, William, Masonbrink, Rick, Williams, Jeffrey, Zimin, Aleksey   +21 more
core   +1 more source

Beware of mis-assembled genomes [PDF]

Bioinformatics, 2005
With hundreds of genomes now in GenBank, researchers might be forgiven for assuming that genome sequence data are correct, at least at a large scale. Certainly there might be errors at some small rate, perhaps 1 in 50 000 or 100 000 bases (Schmutz et al., 2004; Read et al., 2002), but at a large scale these genomes are put together correctly, are not ...
Steven Salzberg, James A. Yorke
openaire   +2 more sources

The genome sequence of Inga leiocalycina Benth. [version 1; peer review: 2 approved]

Wellcome Open Research
We present a genome assembly from an individual of Inga leiocalycina (Streptophyta; Magnoliopsida; Fabales; Fabaceae). The genome sequence has a total length of 948.00 megabases. Most of the assembly is scaffolded into 13 chromosomal pseudomolecules. The
R. Toby Pennington, Catherine Kidner, Rowan J. Schley, Alex D. Twyford, Kyle G. Dexter, Todd P. Michael   +5 more
doaj   +1 more source

Sequential packaging of RNA genomic segments during the assembly of Bluetongue virus. [PDF]

, 2014
Bluetongue virus (BTV), a member of the Orbivirus genus within the Reoviridae family, has a genome of 10 double-stranded RNA segments, with three distinct size classes.
Roy, Polly, Sung, Po-Yu, Po-yu Sung, Polly Roy   +3 more
core   +1 more source

Reassociation kinetics-based approach for partial genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus [PDF]

, 2010
Background: The size and repetitive nature of the Rhipicephalus microplus genome makes obtaining a full genome sequence fiscally and technically problematic. To selectively obtain gene-enriched regions of this tick's genome, Cot filtration was performed,
Matthew Bellgard, Peterson, D., Appolinaire Djikeng, Nene, Vishvanath M., Felix D Guerrero, Guerrero, F.D., Caler, E., Moolhuijzen, Paula, Vishvanath M Nene, Elisabet Caler, Djikeng, Appolinaire, Nene, V.M., Paula Moolhuijzen, Moolhuijzen, P., Shelby Bidwell, Bellgard, M., Daniel G Peterson, Nene, V., Djikeng, A., Guerrero, F., Peterson, D.G., Bidwell, S.   +21 more
core   +1 more source