Results 31 to 40 of about 757,981 (296)
Wellcome Open Research, 2021 We present a genome assembly from an individual female Rana temporaria (the common frog; Chordata; Amphibia; Anura; Ranidae). The genome sequence is 4.11 gigabases in span.
Jeffrey W. Streicher
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, 2021 Msc in Computational Biology of Universidad Politécnica de Madrid (UPM) Course: Genomics Data Analysis and Visualization Lesson 3: Genome assembly This tutorial is designed to introduce the tools, data types and workflow for bacterial genome assembly.
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An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies [PDF]
, 2014 Background: Cost effective next generation sequencing technologies now enable the production of genomic datasets for many novel planktonic eukaryotes, representing an understudied reservoir of genetic diversity. O.
Blanc-Mathieu, Romain +14 more
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Modernizing Reference Genome Assemblies
PLoS Biology, 2011 I have read the journal's policy and have the following conflicts: Paul Flicek is married to the deputy editor of PLoS Medicine, Melissa Norton. Evan Eichler is on the board of Pacific Biosciences. Support for this work came from the Intramural Research Program of the NIH, The National Library of Medicine, the European Molecular Biology ...
Church, Deanna M +38 more
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A chromosome-level genome assembly of the Korean crossbred pig Nanchukmacdon (Sus scrofa)
Scientific Data, 2023 As plentiful high-quality genome assemblies have been accumulated, reference-guided genome assembly can be a good approach to reconstruct a high-quality assembly.
Daehong Kwon +12 more
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Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly [PDF]
, 2012 Motivation: Eugene Myers in his string graph paper (Myers, 2005) suggested that in a string graph or equivalently a unitig graph, any path spells a valid assembly.
Depristo +15 more
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JTK: targeted diploid genome assembler
Bioinformatics, 2023 Abstract Motivation Diploid assembly, or determining sequences of homologous chromosomes separately, is essential to elucidate genetic differences between haplotypes. One approach is to call and phase single nucleotide variants (SNVs) on a reference sequence. However, this approach becomes unstable on
Bansho Masutani +3 more
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The genome sequence of Inga leiocalycina Benth. [version 1; peer review: 2 approved]
Wellcome Open ResearchWe present a genome assembly from an individual of Inga leiocalycina (Streptophyta; Magnoliopsida; Fabales; Fabaceae). The genome sequence has a total length of 948.00 megabases. Most of the assembly is scaffolded into 13 chromosomal pseudomolecules. The
R. Toby Pennington +5 more
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PACVr: plastome assembly coverage visualization in R
BMC Bioinformatics, 2020 Background Plastid genomes typically display a circular, quadripartite structure with two inverted repeat regions, which challenges automatic assembly procedures.
Michael Gruenstaeudl, Nils Jenke
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A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933. [PDF]
, 2014 Escherichia coli EDL933 is the prototypic strain for enterohemorrhagic E. coli serotype O157:H7, associated with deadly food-borne outbreaks. Because the publicly available sequence of the EDL933 genome has gaps and >6,000 ambiguous base calls, we ...
Aziz, Ramy K +4 more
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