Results 11 to 20 of about 452,095 (265)
Wellcome Open Research, 2022 We present a genome assembly from an individual female Vespula germanica (the German wasp; Arthropoda; Insecta; Hymenoptera; Vespidae). The genome sequence is 206 megabases in span.
Liam M. Crowley
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Genome assembly of six polyploid potato genomes [PDF]
Scientific Data, 2020 AbstractGenome assembly of polyploid plant genomes is a laborious task as they contain more than two copies of the genome, are often highly heterozygous with a high level of repetitive DNA. Next Generation genome sequencing data representing one Chilean and five Peruvian polyploid potato (Solanum spp.) landrace genomes was used to construct genome ...
Maria Kyriakidou +4 more
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Rapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome. [PDF]
PLoS ONE, 2013 Next-generation sequencing (NGS) technologies have enabled high-throughput and low-cost generation of sequence data; however, de novo genome assembly remains a great challenge, particularly for large genomes.
Alex R Hastie +12 more
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B-assembler: a circular bacterial genome assembler
BMC Genomics, 2022 Abstract Background Accurate bacteria genome de novo assembly is fundamental to understand the evolution and pathogenesis of new bacteria species. The advent and popularity of Third-Generation Sequencing (TGS) enables assembly of bacteria genomes at an unprecedented speed. However, most current
Fengyuan Huang +7 more
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Optical map guided genome assembly
BMC Bioinformatics, 2020 Background The long reads produced by third generation sequencing technologies have significantly boosted the results of genome assembly but still, genome-wide assemblies solely based on read data cannot be produced.
Miika Leinonen, Leena Salmela
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Comparing memory-efficient genome assemblers on stand-alone and cloud infrastructures. [PDF]
PLoS ONE, 2013 A fundamental problem in bioinformatics is genome assembly. Next-generation sequencing (NGS) technologies produce large volumes of fragmented genome reads, which require large amounts of memory to assemble the complete genome efficiently.
Dimitrios Kleftogiannis +2 more
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BMC Research Notes, 2023 Objective The tarnished plant bug (TPB), Lygus lineolaris (Palisot de Beauvois) (Hemiptera: Miridae), is a pest damaging many cultivated crops in North America.
O. P. Perera +10 more
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Data in Brief, 2022 Trichoderma asperellum PK1J2 is a promising cellulase-producing fungus isolated from a palm empty fruit bunch in Riau, Indonesia. Presented here is the genome assembly of T. asperellum PK1J2.
Fela Laila Nur Hidayati +4 more
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BMC Genomics, 2019 Background Mithun (Bos frontalis), also called gayal, is an endangered bovine species, under the tribe bovini with 2n = 58 XX chromosome complements and reared under the tropical rain forests region of India, China, Myanmar, Bhutan and Bangladesh ...
Sabyasachi Mukherjee +11 more
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HGGA: hierarchical guided genome assembler
BMC Bioinformatics, 2022 AbstractBackgroundDe novogenome assembly typically produces a set of contigs instead of the complete genome. Thus additional data such as genetic linkage maps, optical maps, or Hi-C data is needed to resolve the complete structure of the genome. Most of the previous work uses the additional data to order and orient contigs.ResultsHere we introduce a ...
Riku Walve, Leena Salmela
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