Results 31 to 40 of about 70,807 (316)

Using Neural Networks for Relation Extraction from Biomedical Literature

, 2020
Using different sources of information to support automated extracting of relations between biomedical concepts contributes to the development of our understanding of biological systems.
A Koike, A Lamurias, A Lamurias, A Lamurias, A Lamurias, A Singhal, AV Aho, B Xu, CD Manning, CH Alves, D Westergaard, D Zhou, E Guresen, F Rinaldi, HC Wang, HM Müller, J Hastings, L Aroyo, M Ashburner, MY Kim, N Ma, N Peng, P Goyal, P Zweigenbaum, PN Robinson, Q Li, QL Nguyen, S HayKin, S Hochreiter, TR Gruber, W Wang, WWM Fleuren, Y Hao, Y Luo, Y Xu   +34 more
core   +1 more source

Ontologies for use in Systems Biology: SBO, KiSAO and TEDDY [PDF]

, 2010
The use of computational modelling in the description and analysis of biological systems is at the heart of Systems Biology. Besides the information stored in a core model, there is increasingly a need to provide additional semantic information: to ...
Christian Knuepfer, Dagmar Waltemath, Nick Juty, Nick Juty, Nicolas Le Novère   +4 more
core   +2 more sources

OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system

Journal of Biomedical Semantics, 2018
Background The biodiversity domain, and in particular biological taxonomy, is moving in the direction of semantization of its research outputs. The present work introduces OpenBiodiv-O, the ontology that serves as the basis of the OpenBiodiv Knowledge ...
Viktor Senderov, Kiril Simov, Nico Franz, Pavel Stoev, Terry Catapano, Donat Agosti, Guido Sautter, Robert A. Morris, Lyubomir Penev   +8 more
doaj   +1 more source

RDFScape: Semantic Web meets Systems Biology

BMC Bioinformatics, 2008
Background The recent availability of high-throughput data in molecular biology has increased the need for a formal representation of this knowledge domain. New ontologies are being developed to formalize knowledge, e.g.
Splendiani Andrea
doaj   +1 more source

An evolutionary approach to Function [PDF]

, 2013
Background: Understanding the distinction between function and role is vexing and difficult. While it appears to be useful, in practice this distinction is hard to apply, particularly within biology.
Lord, Phillip
core   +5 more sources

Exploring biomedical ontology mappings with graph theory methods [PDF]

PeerJ, 2017
Background In the era of semantic web, life science ontologies play an important role in tasks such as annotating biological objects, linking relevant data pieces, and verifying data consistency.
Simon Kocbek, Jin-Dong Kim
doaj   +2 more sources

Emerging semantics to link phenotype and environment [PDF]

PeerJ, 2015
Understanding the interplay between environmental conditions and phenotypes is a fundamental goal of biology. Unfortunately, data that include observations on phenotype and environment are highly heterogeneous and thus difficult to find and integrate ...
Anne E. Thessen, Daniel E. Bunker, Pier Luigi Buttigieg, Laurel D. Cooper, Wasila M. Dahdul, Sami Domisch, Nico M. Franz, Pankaj Jaiswal, Carolyn J. Lawrence-Dill, Peter E. Midford, Christopher J. Mungall, Martín J. Ramírez, Chelsea D. Specht, Lars Vogt, Rutger Aldo Vos, Ramona L. Walls, Jeffrey W. White, Guanyang Zhang, Andrew R. Deans, Eva Huala, Suzanna E. Lewis, Paula M. Mabee   +21 more
doaj   +2 more sources

Controlled vocabularies in bioinformatics: A case study in the Gene Ontology [PDF]

, 2004
The automatic integration of information resources in the life sciences is one of the most challenging goals facing biomedical informatics today. Controlled vocabularies have played an important role in realizing this goal, by making it possible to draw ...
Anand Kumar, Bada, Barry Smith, Gene Ontology Consortium, Grenon, Hahn, Kumar, Ogren, Schulz, Smith, Smith, Smith   +11 more
core   +1 more source

Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology

BMC Bioinformatics, 2008
Background Bio-ontologies are key elements of knowledge management in bioinformatics. Rich and rigorous bio-ontologies should represent biological knowledge with high fidelity and robustness.
Antezana Erick, Aranguren Mikel Egaña, Kuiper Martin, Stevens Robert   +3 more
doaj   +1 more source

Desiderata for an ontology of diseases for the annotation of biological datasets. [PDF]

, 2009
There is a plethora of disease ontologies available, all potentially useful for the annotation of biological datasets. We define seven desirable features for such ontologies and examine whether or not these features are supported by eleven disease ...
Anita Burgun, Olivier Bodenreider
core   +1 more source