Results 41 to 50 of about 14,038,774 (295)
Validation of Gene Regulatory Network Inference Based on Controllability
Frontiers in Genetics, 2013 There are two distinct issues regarding network validation: (1) Does an inferred network provide good predictions relative to experimental data? (2) Does a network inference algorithm applied within a certain network model framework yield networks that ...
Edward eDougherty, Xiaoning eQian
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CANA: A Python Package for Quantifying Control and Canalization in Boolean Networks
Frontiers in Physiology, 2018 Logical models offer a simple but powerful means to understand the complex dynamics of biochemical regulation, without the need to estimate kinetic parameters.
Rion B. Correia +6 more
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Identification of dynamic driver sets controlling phenotypical landscapes
Computational and Structural Biotechnology Journal, 2022 Controlling phenotypical landscapes is of vital interest to modern biology. This task becomes highly demanding because cellular decisions involve complex networks engaging in crosstalk interactions.
Silke D. Werle +9 more
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Deterministic and Probabilistic Boolean Control Networks and their application to Gene Regulatory Networks [PDF]
, 2022 openThis thesis focuses on Deterministic and Probabilistic Boolean Control Networks and their application to some specific Gene Regulatory Networks. At first, some introductory materials about Boolean Logic, Left Semi-tensor Product and Probability are ...
CHECH, ALBERTO
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Further Results for Pinning Stabilization of Boolean Networks
, 2021 In this article, pinning stabilization of Boolean networks is further investigated based on semi-tensor product of matrices. First, two novel algorithms are devised to obtain a globally stable Boolean network from new perspectives.
Feng, J, Lam, J, Jia, G, Meng, M
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Scientific Reports, 2022 Transfection of tumor suppressor miRNAs such as miR-34a, miR-449a, and miR-16 with DNA damage can regulate apoptosis and senescence in cancer cells. miR-16 has been shown to influence autophagy in cervical cancer. However, the function of miR-34a and miR-
Shantanu Gupta +7 more
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Are self-organizing biochemical networks emergent? [PDF]
, 2009 Biochemical networks are often called upon to illustrate emergent properties of living systems. In this contribution, I question such emergentist claims by means of theoretical work on genetic regulatory models and random Boolean networks.
Malaterre, Christophe, C. Malaterre
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Identification of periodic attractors in Boolean networks using a priori information.
PLoS Computational Biology, 2022 Boolean networks (BNs) have been developed to describe various biological processes, which requires analysis of attractors, the long-term stable states.
Ulrike Münzner +4 more
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Optimal Control of Probabilistic Boolean Networks: An Information-Theoretic Approach
IEEE Access, 2021 The primary challenge with biological sciences is to control gene regulatory networks (GRNs), thereby creating therapeutic intervention methods that alter network dynamics in the desired manner.
K. Sonam +3 more
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Boolean random networks: phase transition and connectivity [PDF]
, 2023 openIn this thesis I introduce some random network models, with a particular focus on boolean random networks. After having provided the necessary theoretical background, several results related to two topics concerning boolean networks are discussed ...
SPISSO, GIOVANNI
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