Results 31 to 40 of about 849 (213)

Boolean Feedforward Neural Network Modeling of Molecular Regulatory Networks for Cellular State Conversion

open access: yesFrontiers in Physiology, 2020
The molecular regulatory network (MRN) within a cell determines cellular states and transitions between them. Thus, modeling of MRNs is crucial, but this usually requires extensive analysis of time-series measurements, which is extremely difficult to ...
Sang-Mok Choo   +2 more
doaj   +1 more source

On Circuit Functionality in Boolean Networks

open access: yesBulletin of Mathematical Biology, 2013
It has been proved, for several classes of continuous and discrete dynamical systems, that the presence of a positive (resp. negative) circuit in the interaction graph of a system is a necessary condition for the presence of multiple stable states (resp. a cyclic attractor). A positive (resp.
Comet, Jean-Paul   +9 more
openaire   +10 more sources

A fixed point theorem for Boolean networks expressed in terms of forbidden subnetworks [PDF]

open access: yesDiscrete Mathematics & Theoretical Computer Science, 2011
We are interested in fixed points in Boolean networks, $\textit{i.e.}$ functions $f$ from $\{0,1\}^n$ to itself. We define the subnetworks of $f$ as the restrictions of $f$ to the hypercubes contained in $\{0,1\}^n$, and we exhibit a class $\mathcal{F ...
Adrien Richard
doaj   +1 more source

Algorithms for extracting subsystems from a multilevel representation of a system of Boolean functions for joint minimization

open access: yesInformatika
Objectives. The purpose of experimental research is to determine the effectiveness of new algorithms for extracting the so-called connected subsystems from formula descriptions of the original system of Boolean functions.
P. N. Bibilo   +2 more
doaj   +1 more source

Extended robust boolean network of budding yeast cell cycle

open access: yesJournal of Medical Signals and Sensors, 2020
Background: How to explore the dynamics of transition probabilities between phases of budding yeast cell cycle (BYCC) network based on the dynamics of protein activities that control this network?
Sajad Shafiekhani   +3 more
doaj   +1 more source

Stability of linear Boolean networks

open access: yesPhysica D: Nonlinear Phenomena, 2023
18 pages, 3 ...
Karthik Chandrasekhar   +3 more
openaire   +3 more sources

Physical random analysis of Boolean chaos

open access: yesTongxin xuebao, 2019
To analyze the physical randomness of Boolean chaos,the model for chaotic circuit system based on autonomous Boolean network was established.In addition,the equations of the Boolean network with phase noise were deduced.By considering the phase noise,the
Lishuang GONG   +4 more
doaj   +2 more sources

A full bayesian approach for boolean genetic network inference. [PDF]

open access: yesPLoS ONE, 2014
Boolean networks are a simple but efficient model for describing gene regulatory systems. A number of algorithms have been proposed to infer Boolean networks.
Shengtong Han   +5 more
doaj   +1 more source

Dynamics of boolean networks

open access: yesDiscrete and Continuous Dynamical Systems - S, 2011
Boolean networks are special types of finite state time-discrete dynamical systems. A Boolean network can be described by a function from an n-dimensional vector space over the field of two elements to itself. A fundamental problem in studying these dynamical systems is to link their long term behaviors to the structures of the functions that define ...
openaire   +2 more sources

SAILoR: Structure-Aware Inference of Logic Rules.

open access: yesPLoS ONE
Boolean networks provide an effective mechanism for describing interactions and dynamics of gene regulatory networks (GRNs). Deriving accurate Boolean descriptions of GRNs is a challenging task.
Žiga Pušnik   +3 more
doaj   +1 more source

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