Carbohydrate-active enzyme profiles of Lactiplantibacillus plantarum strain 84-3 contribute to flavor formation in fermented dairy and vegetable products. [PDF]
Food Chem X, 2023 Highlights • Lactobacillus, Streptococcus, and Lactococcus were majorly found in dairy products.• Major genera in fermented vegetables were Lactobacillus, Weissella, and Carnimonas.• Phages of Siphoviridae, Myoviridae, and Herelleviridae were found in ...
Liang T +6 more
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Effect of Thermophilic Microbial Agents on Crude Fiber Content, Carbohydrate-Active Enzyme Genes, and Microbial Communities during Chinese Medicine Residue Composting. [PDF]
ACS Omega, 2023 The objective of this study was to investigate the impact of thermophilic bacteria on crude fiber content, carbohydrate-active enzyme (CAZyme) genes, and associated microbial communities during Chinese medicine residues composting.
Chen X +7 more
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Phylogenetic systematics of Butyrivibrio and Pseudobutyrivibrio genomes illustrate vast taxonomic diversity, open genomes and an abundance of carbohydrate-active enzyme family isoforms. [PDF]
Microb Genom, 2021 Butyrivibrio and Pseudobutyrivibrio dominate in anaerobic gastrointestinal microbiomes, particularly the rumen, where they play a key role in harvesting dietary energy.
Pidcock SE +6 more
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Carbohydrate-active enzyme (CAZyme) discovery and engineering <i>via</i> (Ultra)high-throughput screening. [PDF]
RSC Chem BiolCarbohydrate-active enzymes (CAZymes) constitute a diverse set of enzymes that catalyze the assembly, degradation, and modification of carbohydrates. These enzymes have been fashioned into potent, selective catalysts by millennia of evolution, and yet ...
Wardman JF, Withers SG.
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Combined whole cell wall analysis and streamlined in silico carbohydrate-active enzyme discovery to improve biocatalytic conversion of agricultural crop residues. [PDF]
Biotechnol Biofuels, 2021 The production of biofuels as an efficient source of renewable energy has received considerable attention due to increasing energy demands and regulatory incentives to reduce greenhouse gas emissions.
Tingley JP, Low KE, Xing X, Abbott DW.
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Cayman enables large-scale analysis of gut microbiome carbohydrate-active enzyme repertoires. [PDF]
Nat MicrobiolCarbohydrate-active enzymes (CAZymes) are crucial for digesting glycans, but tools for CAZyme profiling and interpretation of substrate preferences in microbiome data are lacking.
Ducarmon QR +10 more
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Mini-Review: The Distinct Carbohydrate Active Enzyme Secretome of <i>Rhizopus</i> spp. Represents Fitness for Mycelium Remodeling and Solid-State Plant Food Fermentation. [PDF]
ACS OmegaRhizopus is a genus of filamentous fungi belonging to the Mucoromycota division. Rhizopus species produce a white, dense mycelium, which is used to create tempeh, a solid-state fermented Asian soybean product, that is gaining renewed attention as a ...
Vellozo-Echevarría T +3 more
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Random forest machine-learning algorithm classifies white- and brown-rot fungi according to the number of the genes encoding Carbohydrate-Active enZyme families. [PDF]
Appl Environ MicrobiolWood-rotting fungi play an important role in the global carbon cycle because they are the only known organisms that digest wood, the largest carbon stock in nature. In the present study, we used linear discriminant analysis and random forest (RF) machine
Hasegawa N, Sugiyama M, Igarashi K.
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A carbohydrate-active enzyme (CAZy) profile links successful metabolic specialization of Prevotella to its abundance in gut microbiota. [PDF]
Sci Rep, 2020 Gut microbiota participates in diverse metabolic and homeostatic functions related to health and well-being. Its composition varies between individuals, and depends on factors related to host and microbial communities, which need to adapt to utilize ...
Aakko J +7 more
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dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation. [PDF]
Nucleic Acids Res, 2018 Carbohydrate-active enzyme (CAZymes) are not only the most important enzymes for bioenergy and agricultural industries, but also very important for human health, in that human gut microbiota encode hundreds of CAZyme genes in their genomes for degrading ...
Huang L +8 more
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