Results 101 to 110 of about 136,245 (330)
Applications of recurrent neural networks in batch reactors. Part I: NARMA modelling of the dynamic behaviour of the heat transfer fluid [PDF]
, 1997 This paper is focused on the development of nonlinear models, using artificial neural networks, able to provide appropriate predictions when acting as process simulators. The dynamic behaviour of the heat transfer fluid temperature in a jacketed chemical
J.M. Zaldı́var +3 more
core +1 more source
FEBS Letters, EarlyView.An unexpected alternative interaction site for ethyl viologen was identified in formate dehydrogenase 1 from Methylorubrum extorquens. Combined mutagenesis, kinetic analysis, and docking revealed that aromatic residues near an iron–sulfur cluster enable flavin mononucleotide‐independent electron transfer, offering a framework for engineering improved ...
Eleni G. Poloniataki, Yong Hwan Kim
wiley +1 more source
Nonequilibrium Thermodynamics of Chemical Reaction Networks: Wisdom from Stochastic Thermodynamics
Physical Review X, 2016 We build a rigorous nonequilibrium thermodynamic description for open chemical reaction networks of elementary reactions. Their dynamics is described by deterministic rate equations with mass action kinetics.
Riccardo Rao, Massimiliano Esposito
doaj +1 more source
Crosstalk and the cooperation of collectively autocatalytic reaction networks [PDF]
, 2009 We examine a potential role of signalling crosstalk in Artificial Cell Signalling Networks (ACSNs). In this research, we regard these ACSNs as subsets of collectively autocatalytic (i.e., organizationally closed) reaction networks being able to both self-
James Decraene +5 more
core +1 more source
Tumour–host interactions in Drosophila: mechanisms in the tumour micro‐ and macroenvironment
Molecular Oncology, EarlyView.This review examines how tumour–host crosstalk takes place at multiple levels of biological organisation, from local cell competition and immune crosstalk to organism‐wide metabolic and physiological collapse. Here, we integrate findings from Drosophila melanogaster studies that reveal conserved mechanisms through which tumours hijack host systems to ...
José Teles‐Reis, Tor Erik Rusten
wiley +1 more source
Subtype‐specific enhancer RNAs define transcriptional regulators and prognosis in breast cancers
Molecular Oncology, EarlyView.This study employed machine learning methodologies to perform the subtype‐specific classification of RNA‐seq data sets, which are mapped on enhancers from TCGA‐derived breast cancer patients. Their integration with gene expression (referred to as ProxCReAM eRNAs) and chromatin accessibility profiles has the potential to identify lineage‐specific and ...
Aamena Y. Patel +6 more
wiley +1 more source
Polar Coding with Chemical Reaction Networks
CoRR, 2019 In this paper, we propose a new polar coding scheme with molecular programming, which is capable of highly parallel implementation at a nano-scale without a need of electrical power sources. We designed chemical reaction networks (CRN) to employ either successive cancellation (SC) or maximum-likelihood (ML) decoding schemes for short polar codes.
Toshiki Matsumine +2 more
openaire +2 more sources
Deep Abstractions of Chemical Reaction Networks [PDF]
, 2018 Multi-scale modeling of biological systems, for instance of tissues composed of millions of cells, are extremely demanding to simulate, even resorting to High Performance Computing (HPC) facilities, particularly when each cell is described by a detailed model of some intra-cellular pathways and cells are coupled and interacting at the tissue level ...
Bortolussi, Luca, PALMIERI, LUCA
openaire +2 more sources
Roles of network topology in the relaxation dynamics of simple chemical reaction network models
Scientific ReportsUnderstanding the relationship between the structure of chemical reaction networks and their reaction dynamics is essential for unveiling the design principles of living organisms.
Yusuke Himeoka +3 more
doaj +1 more source
Julia Framework for Chemical Reaction Networks (CRN)
, 2020 Julia framework for chemical reaction networks used in my Master's ...
Kurjahn, Maximilian Stephan
core +1 more source