Results 31 to 40 of about 447,849 (263)
Monotone Chemical Reaction Networks [PDF]
Journal of Mathematical Chemistry, 2006 zbMATH Open Web Interface contents unavailable due to conflicting licenses.
P. DE LEENHEER, ANGELI, DAVID, E. SONTAG
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Siphons in Chemical Reaction Networks [PDF]
Bulletin of Mathematical Biology, 2010 Siphons in a chemical reaction system are subsets of the species that have the potential of being absent in a steady state. We present a characterization of minimal siphons in terms of primary decomposition of binomial ideals, we explore the underlying geometry, and we demonstrate the effective computation of siphons using computer algebra software ...
Shiu, Anne, Sturmfels, Bernd
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DNA‐Based Chemical Reaction Networks for Biosensing Applications
Advanced Intelligent Systems, 2020 The nature of biosensing is a biochemical reaction. DNA‐based chemical reaction networks (DNA‐CRNs) as a powerful programming language for describing behaviors of chemical reactions have shown great potential in designs and applications of biosensors ...
Zhijun Li +6 more
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Molecular codes in biological and chemical reaction networks. [PDF]
PLoS ONE, 2013 Shannon's theory of communication has been very successfully applied for the analysis of biological information. However, the theory neglects semantic and pragmatic aspects and thus cannot directly be applied to distinguish between (bio-) chemical ...
Dennis Görlich, Peter Dittrich
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Thermodynamics of non-elementary chemical reaction networks
New Journal of Physics, 2020 We develop a thermodynamic framework for closed and open chemical networks applicable to non-elementary reactions that do not need to obey mass action kinetics.
Francesco Avanzini +2 more
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What makes a reaction network “chemical”?
Journal of Cheminformatics, 2022 Abstract Background Reaction networks (RNs) comprise a set X of species and a set $$\mathscr {R}$$ R of reactions $$Y\rightarrow Y'$$ Y → Y ′
Müller, Stefan +2 more
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A model of spatio-temporal regulation within biomaterials using DNA reaction–diffusion waveguides
Royal Society Open Science, 2022 In multi-cellular organisms, cells and tissues coordinate biochemical signal propagation across length scales spanning micrometres to metres. Designing synthetic materials with similar capacities for coordinated signal propagation could allow these ...
Phillip J. Dorsey +2 more
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Leaderless Deterministic Chemical Reaction Networks [PDF]
Natural Computing, 2013 This paper answers an open question of Chen, Doty, and Soloveichik [1], who showed that a function f:N^k --> N^l is deterministically computable by a stochastic chemical reaction network (CRN) if and only if the graph of f is a semilinear subset of N^{k+l}.
Doty, David, Hajiaghayi, Monir
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Hessian geometry of nonequilibrium chemical reaction networks and entropy production decompositions
Physical Review Research, 2022 We derive the Hessian geometric structure of nonequilibrium chemical reaction networks on the flux and force spaces induced by the Legendre duality of convex dissipation functions and characterize their dynamics as a generalized flow. With this geometric
Tetsuya J. Kobayashi +3 more
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Families of toric chemical reaction networks [PDF]
Journal of Mathematical Chemistry, 2020 AbstractWe study families of chemical reaction networks whose positive steady states are toric, and therefore can be parameterized by monomials. Families are constructed algorithmically from a core network; we show that if a family member is multistationary, then so are all subsequent networks in the family.
Michael F. Adamer, Martin Helmer
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