Grip on complexity in chemical reaction networks [PDF]
Beilstein Journal of Organic Chemistry, 2017 A new discipline of “systems chemistry” is emerging, which aims to capture the complexity observed in natural systems within a synthetic chemical framework.
Albert S. Y. Wong, Wilhelm T. S. Huck
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Monotone Chemical Reaction Networks [PDF]
Journal of Mathematical Chemistry, 2006 We analyze certain chemical reaction networks and show that every solution converges to some steady state. The reaction kinetics are assumed to be monotone but otherwise arbitrary.
Patrick De Leenheer +2 more
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Chemical Reaction Networks Explain Gas Evolution Mechanisms in Mg-Ion Batteries. [PDF]
J Am Chem Soc, 2023 Out-of-equilibrium electrochemical reaction mechanisms are notoriously difficult to characterize. However, such reactions are critical for a range of technological applications.
Spotte-Smith EWC +8 more
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DNA‐Based Chemical Reaction Networks for Biosensing Applications
Advanced Intelligent Systems, 2020 The nature of biosensing is a biochemical reaction. DNA‐based chemical reaction networks (DNA‐CRNs) as a powerful programming language for describing behaviors of chemical reactions have shown great potential in designs and applications of biosensors ...
Zhijun Li +6 more
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Complex chemical reaction networks for future information processing [PDF]
Frontiers in NeuroscienceTackling the increasing energy demand of our society is one of the key challenges today. With the rise of artificial intelligence, information and communication technologies started to substantially contribute to this alarming trend and therefore ...
Katja-Sophia Csizi, Emanuel Lörtscher
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A Drive towards Thermodynamic Efficiency for Dissipative Structures in Chemical Reaction Networks [PDF]
Entropy, 2021 Dissipative accounts of structure formation show that the self-organisation of complex structures is thermodynamically favoured, whenever these structures dissipate free energy that could not be accessed otherwise.
Kai Ueltzhöffer +3 more
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Gears in chemical reaction networks for optimizing energy transduction efficiency [PDF]
Nature CommunicationsSimilarly to gear systems in vehicles, most chemical reaction networks (CRNs) involved in energy transduction have at their disposal multiple transduction pathways, each characterized by distinct efficiencies. We conceptualize these pathways as ‘chemical
Massimo Bilancioni +1 more
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Quantifying and comparing causal patterns in stochastic chemical reaction networks [PDF]
npj Systems Biology and ApplicationsChemical reaction networks (CRNs) are broadly used to study biological systems via simulations. Gillespie’s Stochastic Simulation Algorithm (SSA) is commonly used to perform stochastic simulations with CRNs. Comparing two CRNs in such a setting relies on
Ozan Kahramanoğulları
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BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts. [PDF]
PLoS Computational Biology, 2022 Biochemical interactions in systems and synthetic biology are often modeled with chemical reaction networks (CRNs). CRNs provide a principled modeling environment capable of expressing a huge range of biochemical processes.
William Poole +4 more
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Comparison Theorems for Stochastic Chemical Reaction Networks. [PDF]
Bull Math Biol, 2023 Campos FA +4 more
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