Results 1 to 10 of about 447,730 (146)

Chemical Reaction Networks’ Programming for Solving Equations [PDF]

Current Issues in Molecular Biology, 2022
The computational ability of the chemical reaction networks (CRNs) using DNA as the substrate has been verified previously. To solve more complex computational problems and perform the computational steps as expected, the practical design of the basic ...
Ziwei Shang, Changjun Zhou, Qiang Zhang
doaj   +4 more sources

Translated chemical reaction networks. [PDF]

Bull Math Biol, 2014
Many biochemical and industrial applications involve complicated networks of simultaneously occurring chemical reactions. Under the assumption of mass action kinetics, the dynamics of these chemical reaction networks are governed by systems of polynomial
Johnston MD.
europepmc   +6 more sources

Operant conditioning of stochastic chemical reaction networks. [PDF]

PLoS Computational Biology, 2022
Adapting one's behavior to environmental conditions and past experience is a key trait of living systems. In the biological world, there is evidence for adaptive behaviors such as learning even in naturally occurring, non-neural, single-celled organisms.
David Arredondo, Matthew R Lakin
doaj   +2 more sources

Asymptotology of Chemical Reaction Networks [PDF]

Chemical Engineering Science, 2009
The concept of the limiting step is extended to the asymptotology of multiscale reaction networks. Complete theory for linear networks with well separated reaction rate constants is developed.
A.N. Gorban, A.Y. Zinovyev, Andrianov, Antoulas, Aris, Balian, Bodenstein, Boyd, Brown, Bykov, Christiansen, Condon, Cornish-Bowden, Coxson, Djouad, Dobrushin, Dokoumetzidis, Farkas, Feinberg, Feng, Gibbs, Golub, Gorban, Gorban, Gorban, Gorban, Gorban, Gorban, Gorban, Greuel, Gugercin, Hangos, Hangos, Helfferich, Hutchinson, Jaynes, Johnston, Kazantzis, Klonowski, Kruskal, Kuo, Lall, Lam, Lam, Li, Liao, Lidskii, Lin, Maas, Marcus, Maria, Meyn, Meyn, Northrop, Northrop, O. Radulescu, Pepiot-Desjardins, Prigogine, Procaccia, Radulescu, Ray, Roussel, Segel, Semenov, Seneta, Stueckelberg, Temkin, Toth, Turanyi, Van Mieghem, Varga, Vishik, Vora, Wei, Wei, White, Whitehouse, Yablonskii, Yablonsky, Yablonsky, Zagaris, Zavala   +81 more
core   +8 more sources

Robust finite automata in stochastic chemical reaction networks [PDF]

Royal Society Open Science, 2021
Finite-state automata (FSA) are simple computational devices that can nevertheless illustrate interesting behaviours. We propose that FSA can be employed as control circuits for engineered stochastic biological and biomolecular systems.
David Arredondo, Matthew R. Lakin
doaj   +2 more sources

Stochastic thermodynamics of chemical reaction networks [PDF]

The Journal of Chemical Physics, 2006
For chemical reaction networks described by a master equation, we define energy and entropy on a stochastic trajectory and develop a consistent nonequilibrium thermodynamic description along a single stochastic trajectory of reaction events.
Andrieux D., Hill T. L., Maes C., McQuarrie D. A., Nicolis G., Schmiedl T., Tim Schmiedl, Udo Seifert, van Kampen N. G.   +8 more
core   +3 more sources

Chemical Reaction Networks Possess Intrinsic, Temperature-Dependent Functionality [PDF]

Entropy, 2020
Temperature influences the life of many organisms in various ways. A great number of organisms live under conditions where their ability to adapt to changes in temperature can be vital and largely determines their fitness.
Stephan O. Adler, Edda Klipp
doaj   +2 more sources

Autonomous DNA nanostructures instructed by hierarchically concatenated chemical reaction networks [PDF]

Nature Communications, 2021
Integration and communication of distinct chemical reaction networks is a biological strategy for controlling dynamics of hierarchical structures. Here, the authors report ATP-fuelled autonomous DNA nanotube assembly regulated by DNA strand displacement ...
Jie Deng, Andreas Walther
doaj   +2 more sources

Complex chemical reaction networks for future information processing [PDF]

Frontiers in Neuroscience
Tackling the increasing energy demand of our society is one of the key challenges today. With the rise of artificial intelligence, information and communication technologies started to substantially contribute to this alarming trend and therefore ...
Katja-Sophia Csizi, Emanuel Lörtscher
doaj   +2 more sources

Programmability of Chemical Reaction Networks [PDF]

, 2008
Motivated by the intriguing complexity of biochemical circuitry within individual cells we study Stochastic Chemical Reaction Networks (SCRNs), a formal model that considers a set of chemical reactions acting on a finite number of molecules in a well ...
A Church, A Hjelmfelt, A Turing, AP Arkin, B Levin, CH Bennett, D Gale, D Soloveichik, DT Gillespie, EL Post, EW Mayr, G Păun, G Păun, G Zavattaro, GM Suel, HH McAdams, J Esparza, J Herbrand, JH Conway, JH Conway, K Gödel, K Gödel, L Cardelli, LE Rosier, M Cook, M Cook, M Gibson, M Minsky, MB Elowitz, ML Minsky, MO Magnasco, P Guptasarma, PJE Goss, R Péter, RM Karp, SA Kurtz, W Ackermann   +36 more
core   +8 more sources