Results 31 to 40 of about 574,514 (257)
Imputation for transcription factor binding predictions based on deep learning. [PDF]
PLoS Computational Biology, 2017 Understanding the cell-specific binding patterns of transcription factors (TFs) is fundamental to studying gene regulatory networks in biological systems, for which ChIP-seq not only provides valuable data but is also considered as the gold standard ...
Qian Qin, Jianxing Feng
doaj +1 more source
CSA: a web service for the complete process of ChIP-Seq analysis
BMC Bioinformatics, 2019 Background Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology that combines chromatin immunoprecipitation (ChIP) with next generation of sequencing technology (NGS) to analyze protein interactions with DNA.
Min Li +4 more
doaj +1 more source
ChIP-Seq of HNRNPL in proliferating keratinocytes.
, 2021 List of the genes bound by HNRNPL including the coordinates where the peaks were found. ChIP-Seq, chromatin immunoprecipitation sequencing; HNRNPL, heterogeneous nuclear ribonucleoprotein L. (XLSX)
George L. Sen (6847421) +4 more
core +1 more source
Impact of genome assembly status on ChIP-Seq and ChIP-PET data mapping
BMC Research Notes, 2009 Background ChIP-Seq and ChIP-PET can potentially be used with any genome for genome wide profiling of protein-DNA interaction sites. Unfortunately, it is probable that most genome assemblies will never reach the quality of the human genome assembly ...
Sachs Laurent, Buisine Nicolas
doaj +1 more source
ChIP-Seq analysis of the recruitment of Nurr1 and histone modifiers to the HIV provirus.
, 2022 Histograms show numbers of sequence reads on the Y axis along the length of the reporter HIV-1 pro-viral genome on the X axis. A, Aligned reporter genome. B, Nurr1 (Santa Cruz Biotech, Cat #sc-81345). C, CoREST (Cell Signaling, Cat #14567.
David Alvarez-Carbonell (3721597) +7 more
core +1 more source
lifei176/ChIP-seq-ATAC-seq: ATAC-seq and ChIP-seq
, 2021 This is first ...
lifei176
core +1 more source
SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysis
BMC Bioinformatics, 2018 Background Noises and artifacts may arise in several steps of the next-generation sequencing (NGS) process. Recently, an NGS library preparation method called SMART, or Switching Mechanism At the 5′ end of the RNA Transcript, is introduced to prepare ...
Dejian Zhao, Deyou Zheng
doaj +1 more source
Profiling chromatin regulatory landscape: insights into the development of ChIP-seq and ATAC-seq
Molecular Biomedicine, 2020 Chromatin regulatory landscape plays a critical role in many disease processes and embryo development. Epigenome sequencing technologies such as chromatin immunoprecipitation sequencing (ChIP-seq) and assay for transposase-accessible chromatin with high ...
Shaoqian Ma, Yongyou Zhang
doaj +1 more source
diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates. [PDF]
PLoS ONE, 2013 ChIP-seq is increasingly being used for genome-wide profiling of histone modification marks. It is of particular importance to compare ChIP-seq data of two different conditions, such as disease vs.
Li Shen +5 more
doaj +1 more source
ENCODE-DCC/chip-seq-pipeline2: v1.6.0
, 2020 Conda users should update pipeline's environment. However, reinstalling is always recommended since we added GNU utils to the installer. # To update env $ bash scripts/update_conda_env.sh # To re-install env $ bash scripts/uninstall_conda_env.sh $ bash ...
Paul L. Maurizio +4 more
core +1 more source