Results 21 to 30 of about 574,514 (257)
, 2022 A) Log2 immunoprecipitate/Input ChIP-seq data from each replicate (2x AP2-EXP::GFP and 1xAP2-EXP::HA) of AP2-EXP ChIP-seq visualized by IGV at a representative DNA locus.
Charisse Flerida A. Pasaje (13949382) +13 more
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CMT: a constrained multi-level thresholding approach for ChIP-Seq data analysis. [PDF]
PLoS ONE, 2014 Genome-wide profiling of DNA-binding proteins using ChIP-Seq has emerged as an alternative to ChIP-chip methods. ChIP-Seq technology offers many advantages over ChIP-chip arrays, including but not limited to less noise, higher resolution, and more ...
Iman Rezaeian, Luis Rueda
doaj +1 more source
Low-Cell-Number Epigenome Profiling Aids the Study of Lens Aging and Hematopoiesis
Cell Reports, 2015 Understanding how chromatin modification regulates development and disease can be limited by available material. Despite recent progress, balancing high-quality and reliable mapping using chromatin-immunoprecipitation-based deep sequencing (ChIP-seq ...
Xiaobin Zheng +5 more
doaj +1 more source
An Alternative Approach to ChIP-Seq Normalization Enables Detection of Genome-Wide Changes in Histone H3 Lysine 27 Trimethylation upon EZH2 Inhibition. [PDF]
PLoS ONE, 2016 Chromatin immunoprecipitation and DNA sequencing (ChIP-seq) has been instrumental in inferring the roles of histone post-translational modifications in the regulation of transcription, chromatin compaction and other cellular processes that require ...
Brian Egan +16 more
doaj +1 more source
Prediction accuracy of regulatory elements from sequence varies by functional sequencing technique
Frontiers in Cellular and Infection Microbiology, 2023 IntroductionVarious sequencing based approaches are used to identify and characterize the activities of cis-regulatory elements in a genome-wide fashion.
Ronald J. Nowling +3 more
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Results of ChIP-Seq and DNase-Seq
, 2023 Results of ChIP-Seq and DNase-Seq for Cavendish banana ...
Xiuxiu Li (13880603)
core +1 more source
intePareto: an R package for integrative analyses of RNA-Seq and ChIP-Seq data
BMC Genomics, 2020 Background RNA-Seq, the high-throughput sequencing (HT-Seq) of mRNAs, has become an essential tool for characterizing gene expression differences between different cell types and conditions.
Yingying Cao +2 more
doaj +1 more source
ENCODE-DCC/chip-seq-pipeline2: v2.2.0
, 2022 Upgrade Caper to >=2.2.0 for new HPC features. $ pip install caper>=2.2.0 --upgrade Conda environment name change: encode-chip-seq-pipeline -> encd-chip Please reinstall your Conda environment after updating pipeline's git repo.
Jin wook Lee +5 more
core +1 more source
, 2021 The Quick Files feature was discontinued and it’s files were migrated into this Project on March 11, 2022. The file URL’s will still resolve properly, and the Quick Files logs are available in the Project’s Recent ...
Chip Seq
core +6 more sources
Normalization of ChIP-seq data with control
BMC Bioinformatics, 2012 Background ChIP-seq has become an important tool for identifying genome-wide protein-DNA interactions, including transcription factor binding and histone modifications. In ChIP-seq experiments, ChIP samples are usually coupled with their matching control
Liang Kun, Keleş Sündüz
doaj +1 more source