Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints. [PDF]
Dowell RD, Eddy SR.
europepmc +1 more source
Accelerated probabilistic inference of RNA structure evolution. [PDF]
Holmes I.
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Information-theoretic uncertainty of SCFG-modeled folding space of the non-coding RNA. [PDF]
Manzourolajdad A +3 more
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RNA search with decision trees and partial covariance models. [PDF]
Smith JA.
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Unifying syntactic theory and sentence processing difficulty through a connectionist minimalist parser. [PDF]
Gerth S, Beim Graben P.
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Identifying novel sequence variants of RNA 3D motifs. [PDF]
Zirbel CL +5 more
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Hidden Markov Models and their Applications in Biological Sequence Analysis. [PDF]
Yoon BJ.
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A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more. [PDF]
Rivas E, Lang R, Eddy SR.
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The Cocke-Younger-Kasami algorithm for cyclic strings
J. Oncina
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