Results 61 to 70 of about 16,901 (183)

Equipped for success: genomes and metabolomes of the European Amanita muscaria are conserved in its novel South African range

open access: yesNew Phytologist, EarlyView.
Summary Plants and soils have been moved around the world for centuries, but invasive mushrooms receive scant attention. The Amanita muscaria species complex was introduced to South Africa in the context of forestry, but its origins, ecology and recent evolution are unstudied. We sequenced the genomes of 24 Northern and Southern Hemisphere A. muscaria,
Grant R. Nickles   +39 more
wiley   +1 more source

an island endemic forest specialist and a widespread habitat generalist [PDF]

open access: yes, 2016
Background. The bay cat Catopuma badia is endemic to Borneo, whereas its sister species the Asian golden cat Catopuma temminckii is distributed from the Himalayas and southern China through Indochina, Peninsular Malaysia and Sumatra.
Fickel, Joerns   +11 more
core   +1 more source

A Targeted BLAST‐CAP3 Workflow for Rapid and Reproducible Mitochondrial Gene Assembly From Public Transcriptomes: Acheta domesticus as a Model

open access: yesNatural Sciences, Volume 6, Issue 2, April 2026.
A streamlined transcriptome‐based workflow is presented for rapid and reproducible assembly of the mitochondrial COX1 gene. RNA‐Seq datasets are filtered using BLAST to extract target reads, followed by de novo assembly with CAP3 and validation via ClustalW and BLASTn.
Yash Munnalal Gupta
wiley   +1 more source

Sequence and organization of the complete mitochondrial genome of the blackfly Simulium variegatum (Diptera: Simuliidae) [PDF]

open access: yes, 2016
The complete mitochondrial genome of the European blackfly, Simulium variegatum Meigen, 1818 was sequenced using a combined Illumina and Sanger sequencing approach.
Day, John C.   +2 more
core   +2 more sources

Reliable Inference of Phylogenomic Relationship via Assembly‐Based Strategy Accommodating Raw Reads and Proteins

open access: yesMolecular Ecology Resources, Volume 26, Issue 3, April 2026.
ABSTRACT Phylogenomics is a transformative approach in systematics, conservation biology, and biomedical research, enabling the inference of evolutionary relationships by leveraging hundreds to thousands of genes from genomic or transcriptomic data. However, acquiring high‐quality genomes and transcriptomes necessitates samples with intact DNA and RNA,
Yunlong Li   +5 more
wiley   +1 more source

Three New Ranidae Mitogenomes and the Evolution of Mitochondrial Gene Rearrangements among Ranidae Species [PDF]

open access: yes, 2018
Various types of gene rearrangements have been discovered in the mitogenoes of the frog family Ranidae. In this study, we determined the complete mitogenome sequence of three Rana frogs.
Biao LI   +5 more
core   +1 more source

SwarmGenomics: A Unified Pipeline for Individual‐Based Whole‐Genome Analyses

open access: yesMolecular Ecology Resources, Volume 26, Issue 3, April 2026.
ABSTRACT Advances in sequencing technologies have made whole‐genome data widely accessible, enabling research in population genetics, evolutionary biology, and conservation. However, analysing whole‐genome sequencing (WGS) data remains challenging, often requiring multiple specialised tools and substantial bioinformatics expertise.
Aure Kylmänen   +5 more
wiley   +1 more source

Norgal: Extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data [PDF]

open access: yes, 2017
Background: Whole-genome sequencing (WGS) projects provide short read nucleotide sequences from nuclear and possibly organelle DNA depending on the source of origin.
Al-Nakeeb, Kosai Ali Ahmed   +2 more
core   +1 more source

Pleistocene Sea‐Level Fluctuation Shapes Archipelago‐Wide Population Structure in the Critically Endangered Lord Howe Island Cockroach Panesthia lata

open access: yesEcology and Evolution, Volume 16, Issue 3, March 2026.
We demonstrate that populations of the critically endangered Lord howe Island cockroach Panesthia lata were connected by land bridges during the last glacial period. Its 4 isolated populations are now highly inbred, suggesting that conservation translocation may be a viable strategy for conservation. ABSTRACT The Lord Howe Island Group (LHIG) is one of
Maxim W. D. Adams   +7 more
wiley   +1 more source

The complete mitochondrial genomes of two ghost moths, Thitarodes renzhiensis and Thitarodes yunnanensis: the ancestral gene arrangement in Lepidoptera [PDF]

open access: yes, 2012
BACKGROUND: Lepidoptera encompasses more than 160,000 described species that have been classified into 45–48 superfamilies. The previously determined Lepidoptera mitochondrial genomes (mitogenomes) are limited to six superfamilies of the lineage Ditrysia.
Chuan Ma   +3 more
core   +1 more source

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