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Data on the solution and processing time reached when constructing a phylogenetic tree using a quantum-inspired computer [PDF]

Data in Brief, 2023
Phylogenetic trees provide insight into the evolutionary trajectories of species and molecules. However, because (2n-5)! Phylogenetic trees can be constructed from a dataset containing n sequences, but this method of phylogenetic tree construction is not
Wataru Onodera, Nobuyuki Hara, Shiho Aoki, Toru Asahi, Naoya Sawamura   +4 more
doaj   +2 more sources

Embedding phylogenetic trees in networks of low treewidth [PDF]

Discrete Mathematics & Theoretical Computer Science, 2023
Given a rooted, binary phylogenetic network and a rooted, binary phylogenetic tree, can the tree be embedded into the network? This problem, called \textsc{Tree Containment}, arises when validating networks constructed by phylogenetic inference methods ...
Leo van Iersel, Mark Jones, Mathias Weller   +2 more
doaj   +1 more source

Common Methods for Phylogenetic Tree Construction and Their Implementation in R [PDF]

Bioengineering
, Yujie Zeng, Hao Youjin
exaly   +2 more sources

Non-binary universal tree-based networks

Journal of Graph Algorithms and Applications, 2022
A tree-based network $N$ on $X$ is called universal if every phylogenetic tree on $X$ is a base tree for $N$. Recently, binary universal tree-based networks have attracted great attention in the literature and their existence has been analyzed in various
Mareike Fischer, Michelle Galla, Kristina Wicke   +2 more
doaj   +1 more source

Edge-related loss of tree phylogenetic diversity in the severely fragmented Brazilian Atlantic forest. [PDF]

PLoS ONE, 2010
Deforestation and forest fragmentation are known major causes of nonrandom extinction, but there is no information about their impact on the phylogenetic diversity of the remaining species assemblages.
Bráulio A Santos, Víctor Arroyo-Rodríguez, Claudia E Moreno, Marcelo Tabarelli   +3 more
doaj   +1 more source

Implementation of Phylogenetic Worksheet to Improve Students’ Tree Thinking and Critical Thinking Skills on Spermatophyte Classification

Lectura: Jurnal Pendidikan, 2023
Recent research shows that students’ ability to read and create phylogenetic trees (tree thinking) is low, meanwhile phylogenetic analysis has become one of the demands on the 2016 version of the 2013 curriculum.
Sofi Rahmania, Topik Hidayat, Bambang Supriatno   +2 more
doaj   +1 more source

Community phylogeny and spatial scale affect phylogenetic diversity metrics in a species‐rich rainforest in Borneo

Ecology and Evolution, 2022
Community phylogenetic analysis is an effective approach to understanding the process of community formation. The phylogenetic tree of the species pool is reconstructed in the first step, and the phylogenetic tree obtained in the second step is used to ...
Seiya Okuno, Tingting Yin, Satoshi Nanami, Shuhei Matsuyama, Koichi Kamiya, Sylvester Tan, Stuart J. Davies, Mohizah Mohamad, Takuo Yamakura, Akira Itoh   +9 more
doaj   +1 more source

On the Matrix Condition of Phylogenetic Tree [PDF]

Evolutionary Bioinformatics, 2020
Dwueng-Chwuan Jhwueng, Brian O'Meara
exaly   +2 more sources

Scalable and Fast Algorithm for Constructing Phylogenetic Trees With Application to IoT Malware Clustering

IEEE Access, 2023
With the development of IoT devices, there is a rapid increase in new types of IoT malware and variants, causing social problems. The malware’s phylogenetic tree has been used in many studies for malware clustering or better understanding of ...
Tianxiang He, Chansu Han, Ryoichi Isawa, Takeshi Takahashi, Shuji Kijima, Jun'ichi Takeuchi   +5 more
doaj   +1 more source

Fungal screening and phylogenetic tree construction [PDF]

E3S Web of Conferences, 2020
The second-generation sequencing technology has achieved rapid development in recent years. It has the advantages of fast speed, high accuracy and low cost compared to the former sequence, so it has a widely application.
Zhou Jianyang
doaj   +1 more source