Results 31 to 40 of about 512,676 (325)
Phylogenetic mixtures on a single tree can mimic a tree of another topology [PDF]
, 2007 Phylogenetic mixtures model the inhomogeneous molecular evolution commonly observed in data. The performance of phylogenetic reconstruction methods where the underlying data is generated by a mixture model has stimulated considerable recent debate.
Matsen, Frederick A., Steel, Mike
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Matchings and phylogenetic trees [PDF]
Proceedings of the National Academy of Sciences, 1998 This paper presents a natural coordinate system for phylogenetic trees using a correspondence with the set of perfect matchings in the complete graph. This correspondence produces a distance between phylogenetic trees, and a way of enumerating all trees in a minimal step order. It is useful in randomized algorithms because it enables moves on the space
Diaconis, Persi W., Holmes, Susan P.
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Classes of tree-based networks
Visual Computing for Industry, Biomedicine, and Art, 2020 Recently, so-called tree-based phylogenetic networks have attracted considerable attention. These networks can be constructed from a phylogenetic tree, called the base tree, by adding additional edges.
Mareike Fischer +4 more
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Phylogenetic impoverishment of Amazonian tree communities in an experimentally fragmented forest landscape. [PDF]
PLoS ONE, 2014 Amazonian rainforests sustain some of the richest tree communities on Earth, but their ecological and evolutionary responses to human threats remain poorly known.
Bráulio A Santos +6 more
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Folding and unfolding phylogenetic trees and networks [PDF]
, 2015 Phylogenetic networks are rooted, labelled directed acyclic graphs which are commonly used to represent reticulate evolution. There is a close relationship between phylogenetic networks and multi-labelled trees (MUL-trees).
C Semple +17 more
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Mitochondrial DNA. Part B. Resources, 2021 We determined a complete mitochondrial genome of Episoriculus leucops. This mitogenome is a circular molecule with 16,838 bp in length, containing 13 protein-coding genes, 22 transfer RNA genes (tRNA), and two ribosomal RNA genes (rRNA).
Dan Chen +4 more
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TreeRipper: towards a fully automated optical tree recognition software [PDF]
, 2010 Relationships between species, genes and genomes have been printed as trees for over a century. Whilst this may have been the best format for exchanging and sharing phylogenetic hypotheses during the 20th century, the worldwide web now provides faster ...
Joseph Hughes
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Unrealistic phylogenetic trees may improve phylogenetic footprinting [PDF]
Bioinformatics, 2017 Abstract Motivation The computational investigation of DNA binding motifs from binding sites is one of the classic tasks in bioinformatics and a prerequisite for understanding gene regulation as a whole.
Nettling, Martin +3 more
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PLoS ONE, 2015 Investigating patterns of phylogenetic structure across different life stages of tree species in forests is crucial to understanding forest community assembly, and investigating forest gap influence on the phylogenetic structure of forest regeneration is
Yi Jin, Hong Qian, Mingjian Yu
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Six simple guidelines for introducing new genera of fungi [PDF]
, 2015 We formulate five guidelines for introducing new genera, plus one recommendation how to publish the results of scientific research. We recommend that reviewers and editors adhere to these guidelines.
Ammirati, Joe +16 more
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