Results 31 to 40 of about 3,378,468 (350)
Towards a Taxonomically Intelligent Phylogenetic Database [PDF]
, 2007 This note outlines some of the key intellectual obstacles that stand in the way of creating a usable phylogenetic database. These challenges include the need to accommodate multiple taxonomic names and classifications, and the need for tools to query ...
Roderic Page
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W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
Nucleic Acids Res., 2016 This article presents W-IQ-TREE, an intuitive and user-friendly web interface and server for IQ-TREE, an efficient phylogenetic software for maximum likelihood analysis.
Jana Trifinopoulos +3 more
semanticscholar +1 more source
Operads and phylogenetic trees
Theory and Applications of Categories, 2017 We construct an operad $\mathrm{Phyl}$ whose operations are the edge-labelled trees used in phylogenetics. This operad is the coproduct of $\mathrm{Com}$, the operad for commutative semigroups, and $[0,\infty)$, the operad with unary operations corresponding to nonnegative real numbers, where composition is addition.
Baez, JC, Otter, N
openaire +4 more sources
Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions [PDF]
, 2012 Dörr D, Gronau I, Moran S, Yavneh I. Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions. Algorithms for Molecular Biology.
Gronau, Ilan +11 more
core +1 more source
Brazilian Journal of Biology, 2021 This study aimed to identify the phylogenetic similarities among the muntjac (Muntiacus spp.). The phylogenetic similarities among seven major muntjac species were studied by comparing the nucleotide sequence of 16s rRNA and cytochrome b genome ...
B. M. Khan +7 more
doaj +1 more source
Nucleic Acids Res., 2016 Interactive Tree Of Life (http://itol.embl.de) is a web-based tool for the display, manipulation and annotation of phylogenetic trees. It is freely available and open to everyone.
Ivica Letunic, P. Bork
semanticscholar +1 more source
Testing robustness of relative complexity measure method constructing robust phylogenetic trees for Galanthus L. Using the relative complexity measure [PDF]
, 2013 Background: Most phylogeny analysis methods based on molecular sequences use multiple alignment where the quality of the alignment, which is dependent on the alignment parameters, determines the accuracy of the resulting trees.
Sırrı Yüzbaşıoğlu +25 more
core +1 more source
A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism [PDF]
PeerJ, 2021 The Copepoda is a clade of pancrustaceans containing 14,485 species that are extremely varied in their morphology and lifestyle. Not only do copepods dominate marine plankton and sediment communities and make up a sizeable component of the freshwater ...
James P. Bernot +2 more
doaj +2 more sources
OrthoFinder: phylogenetic orthology inference for comparative genomics
Genome Biology, 2019 Here, we present a major advance of the OrthoFinder method. This extends OrthoFinder’s high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted gene trees, gene duplication events, the rooted species tree, and comparative
David M. Emms, S. Kelly
semanticscholar +1 more source
Implicit inequality constraints in a binary tree model [PDF]
, 2011 In this paper we investigate the geometry of a discrete Bayesian network whose graph is a tree all of whose variables are binary and the only observed variables are those labeling its leaves.
Zwiernik, Piotr +3 more
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