Results 41 to 50 of about 280,348 (263)

Multidimensionality of tree communities structure host-parasitoid networks and their phylogenetic composition

eLife
Environmental factors can influence ecological networks, but these effects are poorly understood in the realm of the phylogeny of host-parasitoid interactions.
Ming-Qiang Wang, Shi-Kun Guo, Peng-Fei Guo, Juan-Juan Yang, Guo-Ai Chen, Douglas Chesters, Michael C Orr, Ze-Qing Niu, Michael Staab, Jing-Ting Chen, Yi Li, Qing-Song Zhou, Felix Fornoff, Xiaoyu Shi, Shan Li, Massimo Martini, Alexandra-Maria Klein, Andreas Schuldt, Xiaojuan Liu, Keping Ma, Helge Bruelheide, Arong Luo, Chao-Dong Zhu   +22 more
doaj   +1 more source

tidy tree: A New Layout for Phylogenetic Trees

Molecular Biology and Evolution, 2022
AbstractMany layouts exist for visualizing phylogenetic trees, allowing to display the same information (evolutionary relationships) in different ways. For large phylogenies, the choice of the layout is a key element, because the printable area is limited, and because interactive on-screen visualizers can lead to unreadable phylogenetic relationships ...
Penel, Simon, de Vienne, Damien
openaire   +3 more sources

On Symmetries in Phylogenetic Trees

The Electronic Journal of Combinatorics, 2016
Billey et al. [arXiv:1507.04976] have recently discovered a surprisingly simple formula for the number $a_n(\sigma)$ of leaf-labelled rooted non-embedded binary trees (also known as phylogenetic trees) with $n\geq 1$ leaves, fixed (for the relabelling action) by a given permutation $\sigma\in\frak{S}_n$.
openaire   +3 more sources

Geometry of the Space of Phylogenetic Trees

Advances in Applied Mathematics, 2001
zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Louis J. Billera, Susan P. Holmes, Karen Vogtmann   +2 more
openaire   +2 more sources

Heterozygous loss‐of‐function alleles associate the conserved 3′‐5′ exoribonuclease EXOSC10 with hypersensitivity to the anticancer drug 5‐fluorouracil

Molecular Oncology, EarlyView.
EXOSC10, an essential nuclear RNA exosome‐associated 3′‐5′ exoribonuclease, is inhibited by the anticancer drug 5‐fluorouracil (5‐FU), and EXOSC10 depletion increases 5‐FU sensitivity. The colon‐cancer variant EXOSC10S402T, located in a proteolysis motif, is stable and nuclear but nonfunctional in vivo.
Radhika Sain, Yann Le Page, Frédéric Percevault, Emmanuelle Becker, Luc Negroni, Almudena Fernandez, Marta Cantero, Diego Muñoz‐Santos, Lluís Montoliu, Cyrille Garnier, Michael Primig   +10 more
wiley   +1 more source

Decreased cold‐sensing function of the transient receptor potential channel TRPM8 from tailed amphibians

FEBS Open Bio, EarlyView.
Despite frogs avoiding low temperatures, examination of four salamander species revealed that none avoided cold and all possessed cold tolerance. Functional analysis of TRPM8, a cold sensor, showed that all salamander TRPM8s had lost their cold sensitivity.
Tadahiro Sawao, Daiki Kobayashi, Shogo Hori, Osamu Saitoh   +3 more
wiley   +1 more source

Darwintree: A Molecular Data Analysis and Application Environment for Phylogenetic Study

Data Science Journal, 2015
DarwinTree (http://www.darwintree.cn) provides an integrated bioinformatics platform that supports all phases of the analytical pathway for phylogenetic study from data collections, phylogenetic tree constructions, visualization of the tree of life, and ...
Zhen Meng, Hui Dong, Jianhui Li, Zhiduan Chen, Yuanchun Zhou, Xuezhi Wang, Shouzhou Zhang   +6 more
doaj   +1 more source

Evolutionarily divergent DUF4465 domains have a common vitamin B12‐binding function

FEBS Open Bio, EarlyView.
We show that DUF4465 family proteins, widespread across bacteria from gut microbiomes, hydrothermal vents, and soil, share a common vitamin B12‐binding function. These augmented β‐jellyroll proteins bind vitamin B12 via extended loops. Our findings establish sequence‐diverse DUF4465 proteins as a widespread class of B12‐binding proteins, highlighting ...
Charlea Clarke, Michal Banasik, Rokas Juodeikis, Martin J. Warren, Richard W. Pickersgill   +4 more
wiley   +1 more source

Taxonomic classification of genus Aeromonas using open reading frame-based binarized structure network analysis

Fujita Medical Journal
Objectives: Taxonomic assignment based on whole-genome sequencing data facilitates clear demarcation of species within a complex genus. Here, we applied a unique pan-genome phylogenetic method, open reading frame (ORF)-based binarized structure network ...
Aki Sakurai, Masahiro Suzuki, Kengo Hayashi, Yohei Doi   +3 more
doaj   +1 more source

Aegilops tauschii Coss. molecular phylogeny in comparison with proteins electrophoretic polymorphism

Acta Biologica Sibirica, 2023
In the case of Aegilops tauschii the comparison of intraspecies molecular phylogeny based on DNA sequences of nuclear gene Got2 with electrophoretic polymorphism of allozymes and hystone H1 proteins is actually a comparison of the one detailed ...
Alexander J. Dudnikov
doaj   +1 more source