Fungal screening and phylogenetic tree construction [PDF]
E3S Web of Conferences, 2020 The second-generation sequencing technology has achieved rapid development in recent years. It has the advantages of fast speed, high accuracy and low cost compared to the former sequence, so it has a widely application.
Zhou Jianyang
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Are allometric model parameters of aboveground biomass for trees phylogenetically constrained?
Plant Diversity, 2023 Knowledge of which biological and functional traits have, or lack, phylogenetic signal in a particular group of organisms is important to understanding the formation and functioning of biological communities.
Xing-Zhao Huang +4 more
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Algorithms for Molecular Biology, 2023 Objective In mathematical phylogenetics, a labeled rooted binary tree topology can possess any of a number of labeled histories, each of which represents a possible temporal ordering of its coalescences.
Shaili Mathur, Noah A. Rosenberg
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Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation. [PDF]
Nucleic Acids Res, 2021 Letunic I, Bork P.
europepmc +2 more sources
Towards a barnacle tree of life: integrating diverse phylogenetic efforts into a comprehensive hypothesis of thecostracan evolution [PDF]
PeerJ, 2019 Barnacles and their allies (Thecostraca) are a biologically diverse, monophyletic crustacean group, which includes both intensely studied taxa, such as the acorn and stalked barnacles, as well as cryptic taxa, for example, Facetotecta.
Christine Ewers-Saucedo +6 more
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AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications
BMC Genomics, 2013 Background Due to the rapid progress of next-generation sequencing (NGS) facilities, an explosion of human whole genome data will become available in the coming years.
Van Geystelen Anneleen +2 more
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Visualizing phylogenetic tree landscapes [PDF]
BMC Bioinformatics, 2017 Genomic-scale sequence alignments are increasingly used to infer phylogenies in order to better understand the processes and patterns of evolution. Different partitions within these new alignments (e.g., genes, codon positions, and structural features) often favor hundreds if not thousands of competing phylogenies. Summarizing and comparing phylogenies
Wilgenbusch, James C. +2 more
openaire +2 more sources
A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism [PDF]
PeerJ, 2021 The Copepoda is a clade of pancrustaceans containing 14,485 species that are extremely varied in their morphology and lifestyle. Not only do copepods dominate marine plankton and sediment communities and make up a sizeable component of the freshwater ...
James P. Bernot +2 more
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Brazilian Journal of Biology, 2021 This study aimed to identify the phylogenetic similarities among the muntjac (Muntiacus spp.). The phylogenetic similarities among seven major muntjac species were studied by comparing the nucleotide sequence of 16s rRNA and cytochrome b genome ...
B. M. Khan +7 more
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A New Phylogenetic Inference Based on Genetic Attribute Reduction for Morphological Data
Entropy, 2019 To address the instability of phylogenetic trees in morphological datasets caused by missing values, we present a phylogenetic inference method based on a concept decision tree (CDT) in conjunction with attribute reduction.
Jun Feng +5 more
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