Results 21 to 30 of about 3,378,468 (350)
Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation
Human Mutation, 2009 Manfred Kayser, Mannis van Oven
exaly +2 more sources
The Shapley value of phylogenetic trees [PDF]
Journal of Mathematical Biology, 2007 References added, and a section (calculating the Shapley value of a tree game from its subtrees) was removed for length reasons (request of referee) and may appear in another paper. 16 pages; related work at http://www.math.hmc.edu/~su/papers.html. Journal of Mathematical Biology, to appear.
Haake, Claus-Jochen +2 more
openaire +7 more sources
Towards a barnacle tree of life: integrating diverse phylogenetic efforts into a comprehensive hypothesis of thecostracan evolution [PDF]
PeerJ, 2019 Barnacles and their allies (Thecostraca) are a biologically diverse, monophyletic crustacean group, which includes both intensely studied taxa, such as the acorn and stalked barnacles, as well as cryptic taxa, for example, Facetotecta.
Christine Ewers-Saucedo +6 more
doaj +2 more sources
AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications
BMC Genomics, 2013 Background Due to the rapid progress of next-generation sequencing (NGS) facilities, an explosion of human whole genome data will become available in the coming years.
Van Geystelen Anneleen +2 more
doaj +1 more source
Algorithms for Molecular Biology, 2023 Objective In mathematical phylogenetics, a labeled rooted binary tree topology can possess any of a number of labeled histories, each of which represents a possible temporal ordering of its coalescences.
Shaili Mathur, Noah A. Rosenberg
doaj +1 more source
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
bioRxiv, 2019 IQ-TREE (http://www.iqtree.org) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models ...
M. Bui +6 more
semanticscholar +1 more source
A metric on phylogenetic tree shapes [PDF]
Systematic Biology, 2016 Abstract The shapes of evolutionary trees are influenced by the nature of the evolutionary process, but comparisons of trees from different processes are hindered by the challenge of completely describing tree shape. We present a full characterization of the shapes of rooted branching trees in a form that lends itself to natural tree ...
Colijn, C, Plazzotta, G
openaire +3 more sources
Letter: TreeAdder: a tool to assist the optimal positioning of a new leaf into an existing phylogenetic tree [PDF]
, 2007 TreeAdder is a computer application that adds a leaf in all possible positions on a phylogenetic tree. The resulting set of trees represent a dataset appropriate for maximum likelihood calculation of the optimal tree.
Gatherer, Derek
core +1 more source
Drawing Phylogenetic Trees [PDF]
, 2005 We present linear-time algorithms for drawing phylogenetic trees in radial and circular representations. In radial drawings given edge lengths (representing evolutionary distances) are preserved, but labels (names of taxons represented in the leaves) need to be adjusted, whereas in circular drawings labels are perfectly spread out, but edge lengths ...
Christian Bachmaier +2 more
openaire +2 more sources
Characterization of a Branch of the Phylogenetic Tree [PDF]
Journal of Theoretical Biology, 2003 We use a combination of analytic models and computer simulations to gain insight into the dynamics of evolution. Our results suggest that certain interesting phenomena should eventually emerge from the fossil record. For example, there should be a ``tortoise and hare effect'': Those genera with the smallest species death rate are likely to survive much
Samuel, Stuart A., Weng, Gezhi
openaire +3 more sources