Results 61 to 70 of about 281,835 (164)
Visualising very large phylogenetic trees in three dimensional hyperbolic space
BMC Bioinformatics, 2004 Background Common existing phylogenetic tree visualisation tools are not able to display readable trees with more than a few thousand nodes. These existing methodologies are based in two dimensional space.
Liberles David A +2 more
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Frontiers in Genetics, 2020 A phylogenetic tree can be used to illustrate the evolutionary relationship between a group of genes, especially duplicated genes, which are sources of genetic innovation and are often a hotspot of research.
Fanbo Meng +9 more
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Ecology and EvolutionPhylogenetic trees represent the evolutionary relationships and ancestry of various species or groups of organisms. Comparing these trees by measuring the distance between them is essential for applications such as tree clustering and the Tree of Life ...
Wanlin Li +2 more
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Phylogenetic search through partial tree mixing
BMC Bioinformatics, 2012 Background Recent advances in sequencing technology have created large data sets upon which phylogenetic inference can be performed. Current research is limited by the prohibitive time necessary to perform tree search on a reasonable number of ...
Sundberg Kenneth +5 more
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PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees
BMC Bioinformatics, 2009 Background To effectively apply evolutionary concepts in genome-scale studies, large numbers of phylogenetic trees have to be automatically analysed, at a level approaching human expertise.
Pontarotti Pierre +2 more
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Community Phylogenetics: Assessing Tree Reconstruction Methods and the Utility of DNA Barcodes.
PLoS ONE, 2015 Studies examining phylogenetic community structure have become increasingly prevalent, yet little attention has been given to the influence of the input phylogeny on metrics that describe phylogenetic patterns of co-occurrence.
Elizabeth E Boyle, Sarah J Adamowicz
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How can Sequence Alignment Method Affect the Phylogenetic Relationship Results?
Scientific Papers Animal Science and Biotechnologies, 2023 Sequence alignment is a fundamental step before analysing the phylogenetic relationships between organisms. The effect of the alignment method on the phylogenetic relationship results has not been well studied.
Hossam F. Abou-Shaara
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Interpreting the universal phylogenetic tree [PDF]
Proceedings of the National Academy of Sciences, 2000 The universal phylogenetic tree not only spans all extant life, but its root and earliest branchings represent stages in the evolutionary process before modern cell types had come into being. The evolution of the cell is an interplay between vertically derived and horizontally acquired variation. Primitive cellular entities were necessarily simpler and
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Confidence Sets for Phylogenetic Trees [PDF]
Journal of the American Statistical Association, 2018 Inferring evolutionary histories (phylogenetic trees) has important applications in biology, criminology and public health. However, phylogenetic trees are complex mathematical objects that reside in a non-Euclidean space, which complicates their analysis.
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Consistency of the Neighbor-Net Algorithm
Algorithms for Molecular Biology, 2007 Background Neighbor-Net is a novel method for phylogenetic analysis that is currently being widely used in areas such as virology, bacteriology, and plant evolution.
Moulton Vincent +2 more
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