Results 61 to 70 of about 3,378,468 (350)
A new resolution function to evaluate tree shape statistics.
PLoS ONE, 2019 Phylogenetic trees are frequently used in biology to study the relationships between a number of species or organisms. The shape of a phylogenetic tree contains useful information about patterns of speciation and extinction, so powerful tools are needed ...
Maryam Hayati +2 more
doaj +1 more source
Botanical journal of the Linnean Society, 2020 The field of systematics is experiencing a new molecular revolution driven by the increased availability of high-throughput sequencing technologies.
T. Villaverde +22 more
semanticscholar +1 more source
Conflicting phylogenetic signals in plastomes of the tribe Laureae (Lauraceae) [PDF]
PeerJ, 2020 Background Gene tree discordance is common in phylogenetic analyses. Many phylogenetic studies have excluded non-coding regions of the plastome without evaluating their impact on tree topology. In general, plastid loci have often been treated as a single
Tian-Wen Xiao +5 more
doaj +2 more sources
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Nucleic Acids Res., 2019 The Interactive Tree Of Life (https://itol.embl.de) is an online tool for the display, manipulation and annotation of phylogenetic and other trees. It is freely available and open to everyone.
Ivica Letunic, P. Bork
semanticscholar +1 more source
TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations [PDF]
Bioinform., 2018 Summary TreeGrafter is a new software tool for annotating protein sequences using pre‐annotated phylogenetic trees. Currently, the tool provides annotations to Gene Ontology (GO) terms, and PANTHER family and subfamily.
Hai-Ming Tang, R. Finn, P. Thomas
semanticscholar +1 more source
phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)
bioRxiv, 2023 Phylogenetic comparative methods comprise the general endeavor of using an estimated phylogenetic tree (or set of trees) to make secondary inferences: about trait evolution, diversification dynamics, biogeography, community ecology, and a wide range of ...
L. Revell
semanticscholar +1 more source
tidy tree: A New Layout for Phylogenetic Trees
Molecular Biology and Evolution, 2022 AbstractMany layouts exist for visualizing phylogenetic trees, allowing to display the same information (evolutionary relationships) in different ways. For large phylogenies, the choice of the layout is a key element, because the printable area is limited, and because interactive on-screen visualizers can lead to unreadable phylogenetic relationships ...
Penel, Simon, de Vienne, Damien
openaire +3 more sources
eLifeEnvironmental factors can influence ecological networks, but these effects are poorly understood in the realm of the phylogeny of host-parasitoid interactions.
Ming-Qiang Wang +22 more
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
bioRxiv, 2018 Motivation Phylogenies are important for fundamental biological research, but also have numerous applications in biotechnology, agriculture, and medicine.
Alexey M. Kozlov +4 more
semanticscholar +1 more source
Cancer phylogenetic tree inference at scale from 1000s of single cell genomes
bioRxiv, 2020 A new generation of scalable single cell whole genome sequencing (scWGS) methods allows unprecedented high resolution measurement of the evolutionary dynamics of cancer cell populations.
Sohrab Salehi +14 more
semanticscholar +1 more source