Results 71 to 80 of about 1,652,278 (203)

Sampling motifs on phylogenetic trees [PDF]

Proceedings of the National Academy of Sciences, 2005
We present a method to find motifs by simultaneously using the overrepresentation property and the evolutionary conservation property of motifs. This method is applicable to divergent species where alignment is unreliable, which overcomes a major limitation of the current methods.
Li, Xiaoman, Wong, Wing H.
openaire   +3 more sources

The Shapley Value of Phylogenetic Trees [PDF]

, 2005
Haake C-J, Kashiwada A, Su FE. The Shapley Value of Phylogenetic Trees. Working Papers. Institute of Mathematical Economics. Vol 363. Bielefeld: Universität Bielefeld; 2005.Every weighted tree corresponds naturally to a cooperative game that we call a ...
Kashiwada, Akemi, Su, Francis Edward, Haake, Claus-Jochen   +2 more
core  

BOOL-AN: A method for comparative sequence analysis and phylogenetic reconstruction [PDF]

, 2009
A novel discrete mathematical approach is proposed as an additional tool for molecular systematics which does not require prior statistical assumptions concerning the evolutionary process.
Ittzés, Péter, Jakó, Éena, Horváth, Arnold, Podani, János, Ari, Eszter   +4 more
core   +1 more source

A novel approach to phylogenetic tree construction using stochastic optimization and clustering

BMC Bioinformatics, 2006
Background The problem of inferring the evolutionary history and constructing the phylogenetic tree with high performance has become one of the major problems in computational biology.
Pan Yi, Chen Yixin, Qin Ling, Chen Ling
doaj   +1 more source

Graph-based method for constructing consensus trees [PDF]

BIO Web of Conferences
A consensus tree is a phylogenetic tree that synthesizes a given collection of phylogenetic trees, all of which share the same leaf labels but may have different topologies, typically obtained through bootstrapping.
Torquet Elio, Jansson Jesper, Tahiri Nadia   +2 more
doaj   +1 more source

Visualizing phylogenetic tree landscapes [PDF]

BMC Bioinformatics, 2017
Genomic-scale sequence alignments are increasingly used to infer phylogenies in order to better understand the processes and patterns of evolution. Different partitions within these new alignments (e.g., genes, codon positions, and structural features) often favor hundreds if not thousands of competing phylogenies. Summarizing and comparing phylogenies
James C. Wilgenbusch, Wen Huang 0001, Kyle A. Gallivan   +2 more
openaire   +3 more sources

Spatial Phylogenetics of Florida Vascular Plants: The Effects of Calibration and Uncertainty on Diversity Estimates

iScience, 2019
Summary: Recent availability of biodiversity data resources has enabled an unprecedented ability to estimate phylogenetically based biodiversity metrics over broad scales.
Julie M. Allen, Charlotte C. Germain-Aubrey, Narayani Barve, Kurt M. Neubig, Lucas C. Majure, Shawn W. Laffan, Brent D. Mishler, Hannah L. Owens, Stephen A. Smith, W. Mark Whitten, J. Richard Abbott, Douglas E. Soltis, Robert Guralnick, Pamela S. Soltis   +13 more
doaj   +1 more source

Ctenophorus phylogenetic tree

, 2013
Ctenophorus phylogenetic tree used in community phylogenetic ...
Danielle L. Edwards (816683), L. Lacey Knowles (762035), Hayley C. Lanier (697219)   +2 more
core   +1 more source

Cld Phylogenetic Tree

, 2021
cld-tree.tar.gz contains the Cld phylogenetic tree for this dataset and the sequences and alignments used to build the tree. The specific files in this gzipped tarball are:cld.faa: protein Cld sequences (FASTA format)cld.aln: protein Cld alignment (FASTA
Tyler Barnum (11658994)
core   +1 more source

Visualising very large phylogenetic trees in three dimensional hyperbolic space

BMC Bioinformatics, 2004
Background Common existing phylogenetic tree visualisation tools are not able to display readable trees with more than a few thousand nodes. These existing methodologies are based in two dimensional space.
Liberles David A, Hyun Young, Hughes Timothy   +2 more
doaj   +1 more source