Results 91 to 100 of about 512,676 (325)
Phylogenetic search through partial tree mixing
BMC Bioinformatics, 2012 Background Recent advances in sequencing technology have created large data sets upon which phylogenetic inference can be performed. Current research is limited by the prohibitive time necessary to perform tree search on a reasonable number of ...
Sundberg Kenneth +5 more
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PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees
BMC Bioinformatics, 2009 Background To effectively apply evolutionary concepts in genome-scale studies, large numbers of phylogenetic trees have to be automatically analysed, at a level approaching human expertise.
Pontarotti Pierre +2 more
doaj +1 more source
Proton FLASH Exposure Preserves Gut Commensal Microbiomes and Spares Intestinal Stem Cells
Advanced Science, EarlyView.This study highlights the role of Proton FLASH abdominal irradiation in sparing of intestinal stem cells and preservation of key gut microbial population resulting minimization of radiation toxicity in intestinal epithelium in mice. Our findings support the potential of Proton FLASH to improve the therapeutic ratio for abdominal radiation exposure ...
Rishi Man Chugh +11 more
wiley +1 more source
How can Sequence Alignment Method Affect the Phylogenetic Relationship Results?
Scientific Papers Animal Science and Biotechnologies, 2023 Sequence alignment is a fundamental step before analysing the phylogenetic relationships between organisms. The effect of the alignment method on the phylogenetic relationship results has not been well studied.
Hossam F. Abou-Shaara
doaj
Community Phylogenetics: Assessing Tree Reconstruction Methods and the Utility of DNA Barcodes.
PLoS ONE, 2015 Studies examining phylogenetic community structure have become increasingly prevalent, yet little attention has been given to the influence of the input phylogeny on metrics that describe phylogenetic patterns of co-occurrence.
Elizabeth E Boyle, Sarah J Adamowicz
doaj +1 more source
Drawing Phylogenetic Trees [PDF]
, 2005 We present linear-time algorithms for drawing phylogenetic trees in radial and circular representations. In radial drawings given edge lengths (representing evolutionary distances) are preserved, but labels (names of taxons represented in the leaves) need to be adjusted, whereas in circular drawings labels are perfectly spread out, but edge lengths ...
Christian Bachmaier +2 more
openaire +1 more source
Advanced Science, EarlyView.In maize, the bHLH transcription factor ZmbHLH118 directly binds to the promoter of ZmCLCa and inhibits its expression. Tonoplast‐localized ZmCLCa mediates NO3− influx into the vacuole to regulate intracellular NO3− homeostasis, modulating nitrate uptake and metabolism, plant growth, and grain yield.
Chaonan Zhang +13 more
wiley +1 more source
Identifying phylogenetic trees
Discrete Mathematics, 2005 zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Bordewich, Magnus +2 more
openaire +3 more sources
Identifying Cytokine Motif‐Containing, Immunomodulatory Bacterial Proteins in Human Gut Microbiome
Advanced Science, EarlyView.By building and constructing HMM (Upper left, blue), the authors identify CMCPs in bacteria genomes and CRC related metagenomes and enriched CRC‐related CMCPs (Upper right, blue). They analyze sequence and structural similarity of hits (Lower left, green), test function with engineered EcN delivered to tumors in a mouse tumor model (Lower right, pink ...
Ziyu Wang +12 more
wiley +1 more source
Advanced Science, EarlyView.This study constructed the first spatiotemporal multi‐omics map of peach fruit and discovered a key candidate gene that synergistically regulates trichome development and drought tolerance through the jasmonic acid signaling pathway, providing insights into the coupling mechanism between development and stress resistance.
Zhixin Liu +9 more
wiley +1 more source