Results 91 to 100 of about 91,886 (264)

ADP‐ribosylation: An emerging regulator of the epigenome

Molecular Oncology, EarlyView.
ADP‐ribosylation has emerged as a dynamic epigenetic signaling mechanism that modifies histones and chromatin‐associated proteins. Through coordinated PARylation and MARylation, it integrates with other histone modifications to regulate chromatin structure, transcription factor activity, and gene expression, influencing genome function and disease ...
Cristel V. Camacho, Chenqian Liu, W. Lee Kraus   +2 more
wiley   +1 more source

On the incidence graph of circular spaces

Electronic Journal of Graph Theory and Applications
A configuration of the triple (P,L,I) is an incidence relation which has the properties "any two points are incident with at most one line" and "any two lines are incident with at most one point".
Sezer Sorgun, Ali Gökhan Ertaş, İbrahim Günaltılı   +2 more
doaj   +1 more source

A light‐triggered Time‐Resolved X‐ray Solution Scattering (TR‐XSS) workflow with application to protein conformational dynamics

FEBS Open Bio, EarlyView.
Time‐resolved X‐ray solution scattering captures how proteins change shape in real time under near‐native conditions. This article presents a practical workflow for light‐triggered TR‐XSS experiments, from data collection to structural refinement. Using a calcium‐transporting membrane protein as an example, the approach can be broadly applied to study ...
Fatemeh Sabzian‐Molaei, Fredrik Orädd, Konstantinos Magkakis, Magnus Andersson   +3 more
wiley   +1 more source

Single‐molecule DNA flow‐stretch assays for high‐throughput DNA–protein interaction studies

FEBS Open Bio, EarlyView.
We describe an optimised single‐molecule DNA flow‐stretch assay that visualises DNA–protein interactions in real time. Linear DNA fragments are tethered to a surface and stretched by buffer flow for fluorescence imaging. Using λ and φX174 DNA, this protocol enhances reproducibility and accessibility, providing a versatile approach for studying diverse ...
Ayush Kumar Ganguli, Mohammad Nour Alsamsam, Ugnė Bagdonaitė, Van Truc Vu, Chun‐Jen Huang, Polina Kuzhir, Mindaugas Zaremba, Aurimas Kopūstas, Marijonas Tutkus   +8 more
wiley   +1 more source

Analysing the significance of small conformational changes and low occupancy states in serial crystallographic data

FEBS Open Bio, EarlyView.
This protocol paper outlines methods to establish the success of a time‐resolved serial crystallographic experiment, by means of statistical analysis of timepoint data in reciprocal space and models in real space. We show how to amplify the signal from excited states to visualise structural changes in successful experiments.
Jake Hill, Yelyzaveta Pulnova, Elke De Zitter, Helen M. Ginn, Briony A. Yorke   +4 more
wiley   +1 more source

Configuration Graph Cohomology

, 2017
We investigate an algebraic problem related to the determination of the fundamental group of a class of spaces of configurations on surfaces. The configuration spaces are spaces of points grouped into colors. Whether two points are allowed to collide is determined by a graph, whose vertices are the colors.
openaire   +2 more sources

Cartesian products of graphs and their coherent configurations

Discrete Mathematics
The coherent configuration $\mathsf{WL}(X)$ of a graph $X$ is the smallest coherent configuration on the vertices of $X$ that contains the edge set of $X$ as a relation. The aim of the paper is to study $\mathsf{WL}(X)$ when $X$ is a Cartesian product of graphs.
Jinzhuan Cai, Jin Guo, Alexander L. Gavrilyuk, Ilia Ponomarenko   +3 more
openaire   +3 more sources

YIPFα1A expression is regulated by multilayered molecular mechanisms

FEBS Open Bio, EarlyView.
YIPFα1A, a five‐pass Golgi protein, is regulated at multiple layers. (1) Rare‐codon enrichment drives translation‐coupled mRNA decay. (2) A proximal 3′‐UTR element stabilizes mRNA. (3) A distal 3′‐UTR element included by alternate poly(A) site usage represses translation, which can be overridden by the proximal 3′‐UTR element.
Tokio Takaji, Yurika Nakanishi, Nobuhiro Nakamura   +2 more
wiley   +1 more source

Synthesis and Networking of Spaceborne Deployable Prismatic Antenna Mechanisms Based on Graph Theory

International Journal of Aerospace Engineering
Spaceborne deployable cylindrical antennas have broad application prospects in the fields of space earth observation and remote-sensing detection because of their significant advantages of ultralong aperture, high gain, and flexible beam scanning.
Jialong Zhu, Chuang Shi, Xiaodong Fan, Xiaofei Ma, Hongwei Guo, Shikun Zheng, Rongqiang Liu   +6 more
doaj   +1 more source

Refinement of amino‐acid conformation vs. difference density maps in time‐resolved serial femtosecond crystallography data analysis

FEBS Open Bio, EarlyView.
The dFoCC pipeline starts with observed DED and resting‐state coordinates, which are then used to generate a library of triggered states. Correlation analysis of the calculated DED features of each candidate vs observed DED permits quantitative evaluation of candidate structural quality.
Meng Iao Fong, Yuhei Hosokawa, Lars Oliver Essen, Manuel Maestre‐Reyna   +3 more
wiley   +1 more source