Results 181 to 190 of about 25,970,551 (304)

An interpretable single-cell RNA sequencing data clustering method based on latent Dirichlet allocation. [PDF]

Brief Bioinform, 2023
Yang Q, Xu Z, Zhou W, Wang P, Jiang Q, Juan L.   +5 more
europepmc   +1 more source

Protocol for quantifying miRNA trafficking across the endosomal membrane

FEBS Open Bio, EarlyView.
An in vitro protocol measures miRNA uptake into endosomes isolated from mammalian cell extracts, which are free of subcellular contaminants. Performed at 37 °C in the presence of ATP, it ensures the import of single‐stranded miRNA into the endosomal lumen.
Syamantak Ghosh, Kamalika Mukherjee, Suvendra N. Bhattacharyya   +2 more
wiley   +1 more source

robin2: accelerating single-cell data clustering evaluation. [PDF]

Bioinform Adv
Policastro V, Righelli D, Cutillo L, Carissimo A.   +3 more
europepmc   +1 more source

Investigating mechanism of the effect of emotional facial expressions on attentional processing by data clustering approach. [PDF]

Sci Rep, 2023
Li Y, Zhao W, Peng X.
europepmc   +1 more source

Avidin is evolutionarily conserved in fish but dispensable for development and resistance against Streptococcus agalactiae in zebrafish

FEBS Open Bio, EarlyView.
The presence of biotin‐binding avidin proteins in fish and their biological significance are poorly characterized. We cataloged fish avidins and demonstrate that they are widely present and evolutionarily conserved. We created avd knockout zebrafish and show that zebavidin is dispensable for development and that resistance of avd knockout embryos in ...
Anni K. Saralahti, Markus J. T. Ojanen, Mataleena Parikka, Otto Kauko, Mika Rämet, Vesa P. Hytönen   +5 more
wiley   +1 more source

LS-BMO-HDBSCAN as a hybrid memetic bacterial intelligence framework for efficient data clustering. [PDF]

Sci Rep
Al-Nussairi AKJ, Abdulazez AA, Hadi AA, Malik S, Patro SGK, Mahanty C, Alamiery AA, Naveed QN, Khan S, Zewude A.   +9 more
europepmc   +1 more source

GelMA‐based 3D spheroids recapitulate transcriptomic and functional hallmarks of myeloid sarcoma

FEBS Open Bio, EarlyView.
GelMA 5% hydrogels support the formation of myeloid leukemia spheroids that recapitulate MS‐specific features, including G1 arrest, apoptosis, and ECM‐driven transcriptomic reprogramming. The 3D model mimicked soft‐tissue‐like stiffness and oxygen conditions, and transcriptomic convergence with primary MS samples confirmed its utility as a preclinical ...
Nicolas Germain, Elise Buret, Le Hoang Thanh Nguyen, Marion Cocheteux, Nicolas Touya, Mélanie Dhayer, Romain Dubois, Frank Lafont, Sebastien Janel, Patrice Maboudou, Steve Lancel, Philippe Marchetti   +11 more
wiley   +1 more source

A hybrid neighborhood enhanced contrastive learning and self-knowledge distillation method for scRNA-seq data clustering analysis. [PDF]

Bioinformatics
Qi L, Wang P, Liu H, Chen C, Gu J, Chen C.   +5 more
europepmc   +1 more source

Review of single-cell RNA-seq data clustering for cell-type identification and characterization. [PDF]

RNA, 2023
Zhang S, Li X, Lin J, Lin Q, Wong KC.
europepmc   +1 more source

Using cell‐free RNA to identify B‐ and T‐cell clonality for diagnosis and monitoring of B‐ and T‐cell neoplasms

FEBS Open Bio, EarlyView.
Using peripheral blood for determining B‐cell or T‐cell clonality is more reliable when we use cell‐free RNA (cfRNA) because cells release blood significantly more RNA than DNA. Next‐generation sequencing (NGS) of cfRNA allows us to evaluate fragment cfRNA and evaluate clonality reliably without the need for prior determination of the specific dominant
Adam Albitar, Sally Agersborg, Ahmed Charifa, Pooja Phull, Noa Biran, David Vesole, Harsh Parmar, Andrew Pecora, Andrew Ip, Andre Goy, David Siegel, Maher Albitar   +11 more
wiley   +1 more source