Results 1 to 10 of about 4,183,680 (38)

MisPred: a resource for identification of erroneous protein sequences in public databases [PDF]

, 2013
Correct prediction of the structure of protein-coding genes of higher eukaryotes is still a difficult task; therefore, public databases are heavily contaminated with mispredicted sequences.
Nagy, Alinda, Patthy, László
core   +1 more source

SinEx DB: a database for single exon coding sequences in mammalian genomes [PDF]

, 2016
Indexación: Web of Science.Eukaryotic genes are typically interrupted by intragenic, noncoding sequences termed introns. However, some genes lack introns in their coding sequence (CDS) and are generally known as 'single exon genes' (SEGs).
Cardenas, Juan Pablo, Gonzalez, Carolina, Holmes, David S., Jorquera, Roddy, Ortiz, Rodrigo, Ossandon, F., Sepulveda, Rene   +6 more
core   +1 more source

PeptiCKDdb-peptide- and protein-centric database for the investigation of genesis and progression of chronic kidney disease [PDF]

, 2016
The peptiCKDdb is a publicly available database platform dedicated to support research in the field of chronic kidney disease (CKD) through identification of novel biomarkers and molecular features of this complex pathology.
Fernandes, Marco, Filip, Szymon, Husi, Holger, Jankowski, Joachim, Krochmal, Magdalena, Mischak, Harald, Pontillo, Claudia, Vlahou, Antonia, Zoidakis, Jerome   +8 more
core   +3 more sources

FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. [PDF]

, 2018
The Immune Epitope Database (IEDB), at www.iedb.org, has the mission to make published experimental data relating to the recognition of immune epitopes easily available to the scientific public.
Mungall, Christopher J, Overton, James A, Peters, Bjoern, Sette, Alessandro, Vita, Randi   +4 more
core   +2 more sources

Ewé: a web-based ethnobotanical database for storing and analysing data [PDF]

, 2020
Ethnobotanical databases serve as repositories of traditional knowledge (TK), either at international or local scales. By documenting plant species with traditional use, and most importantly, the applications and modes of use of such species ...
Hawkins, Julie A., Souza, Estevão do Nascimento Fernandes   +1 more
core   +1 more source

ppiTrim: Constructing non-redundant and up-to-date interactomes [PDF]

, 2011
Robust advances in interactome analysis demand comprehensive, non-redundant and consistently annotated datasets. By non-redundant, we mean that the accounting of evidence for every interaction should be faithful: each independent experimental support is ...
Stojmirović, Aleksandar, Yu, Yi-Kuo
core   +3 more sources

decodeRNA-predicting non-coding RNA functions using guilt-by-association [PDF]

, 2017
Although the long non-coding RNA (lncRNA) landscape is expanding rapidly, only a small number of lncRNAs have been functionally annotated. Here, we present decodeRNA (http://www.decoderna.org), a database providing functional contexts for both human ...
Anckaert, Jasper, Lefever, Steve, Luypaert, Manuel, Mestdagh, Pieter, Vandesompele, Jo, Volders, Pieter-Jan   +5 more
core   +2 more sources

Benchmarking database systems for Genomic Selection implementation [PDF]

, 2019
Motivation: With high-throughput genotyping systems now available, it has become feasible to fully integrate genotyping information into breeding programs.
Guignon, Valentin, Jones, Elizabeth, Larmande, Pierre, Matthews, Dave, Nti-Addae, Yaw, Petel, Adrien, Renner, Jon, Robbins, Kelly, Sempere, Guilhem, Syed, Raza, Ulat, Victor Jun   +10 more
core   +2 more sources

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi [PDF]

, 2014
DNA phylogenetic comparisons have shown that morphology-based species recognition often underestimates fungal diversity. Therefore, the need for accurate DNA sequence data, tied to both correct taxonomic names and clearly annotated specimen data, has ...
Abarenkov, K, Aime, MC, Ariyawansa, HA, Bidartondo, M, Boekhout, T, Buyck, B, Cai, Q, Cardinali, G, Chen, J, Crespo, A, Crous, PW, Damm, U, De Beer, ZW, Dentinger, BTM, Dieguez Uribeondo, J, Divakar, PK, Duenas, M, Duong, V, Feau, N, Federhen, S, Fliegerova, K, Garcia, MA, Ge, Z-W, Griffith, G, Groenewald, JZ, Groenewald, M, Grube, M, Gryzenhout, M, Gueidan, C, Guo, L, Hambleton, S, Hamelin, R, Hansen, K, Hofstetter, V, Hong, S-B, Houbraken, J, Hughes, K, Hyde, KD, Inderbitzin, P, Irinyi, L, Johnston, PR, Karunarathna, SC, Kirk, PM, Koljalg, U, Kovacs, GM, Kraichak, E, Krizsan, K, Kurtzman, CP, Larsson, K-H, Leavitt, S, Letcher, PM, Liimatainen, K, Liu, J-K, Lodge, DJ, Luangsa-ard, JJ, Lumbsch, HT, Maharachchikumbura, SSN, Manamgoda, D, Martin, MP, Meyer, W, Miller, AN, Minnis, AM, Moncalvo, J-M, Mule, G, Nakasone, KK, Nilsson, RH, Niskanen, T, Olariaga, I, Papp, T, Petkovits, T, Pino-Bodas, R, Powell, MJ, Raja, HA, Redecker, D, Robbertse, B, Robert, V, Sarmiento-Ramirez, JM, Schoch, CL, Seifert, KA, Shrestha, B, Stenroos, S, Stielow, B, Subbarao, KV, Suh, S-O, Tanaka, K, Tedersoo, L, Teresa Telleria, M, Udayanga, D, Untereiner, WA, Vagvoelgyi, C, Visagie, C, Voigt, K, Walker, DM, Weir, BS, Weiss, M, Wijayawardene, NN, Wingfield, MJ, Xu, JP, Yang, ZL, Zhang, N, Zhuang, W-Y   +100 more
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RegenBase: a knowledge base of spinal cord injury biology for translational research. [PDF]

, 2016
Spinal cord injury (SCI) research is a data-rich field that aims to identify the biological mechanisms resulting in loss of function and mobility after SCI, as well as develop therapies that promote recovery after injury.
Abeyruwan, Saminda W, Al-Ali, Hassan, Bixby, John L, Callahan, Alison, Ferguson, Adam R, Lemmon, Vance P, Popovich, Phillip G, Sakurai, Kunie, Shah, Nigam H, Visser, Ubbo   +9 more
core   +2 more sources